CI01000004_15444403_15453408 (SPPL2, SPPL2B)


Basic Information

Item Value
gene id CI01000004_15444403_15453408
gene name SPPL2, SPPL2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15444403 ~ 15454177 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15444403_15453408.mRNA
ATGAGATTTTTGTCAAGTCTCCTTTGGGCAGCTCTTTTGTTCAAACAGGTTTTAGGTGAATATGGCATGGCACATTTCAGCGAATGGGGGAACACTAAAGGCAAAGATTACTGCATATTCTTCAACTCTCAGTGGGCTCGATTACCTCAGGACCTCAGTAAAGCAGCACGGCTGCAGACGTACGATCTCACCACCTCTGTACTGTGCTCCCCCTCTGATGTACCTGAGGGTGGCTTCCCAAACAGCATCCCAATGGTGATGAGAGGAAATTGCACTTTCTATGAAAAGGTCCGATTGGCCCAGATGAATGGTGCCAAGGGACTACTGATCGTCAGCAAAGATAGACTGACTCCACCCTCAGGCAACAAGTCCCAGTATGAGGAGATAGGCATCCCGGTGGCCTTGCTAAGCTATAAAGACATGCTGGACATCAGTAAGACGTTTGGGGAGAAACGGCAGGTGGCCATGTATGCGCCCAATGAACCGGTGGTGGACTACAACATGGTGCTTATCTTTCTAATGGCAGTGGGCACAGTGGCTGTCGGAGGATATTGGGCTGGCAGCAGGGACATTAAAAAACGTTACATGAAGCACAAAAGGGACGACGGTGCTGAGAAGCAAGACGAGGAGACCGTTGACGTCACCCCCATCATGATTTGTGTGTTTGTGGTCATGTGCTGCTCTATGCTGGTGCTCTTGTATTACTTCTATGATCAATTAGTGTATATGACTATAGCGACGTTCTGTCTGGCATCTGCCGTCGGTCTGTATAGCTGTCTTTGGCCTTTTGTCCGAAGAATACCATTAGGGAAATGCAGGATACCTGAGAATAACCTGCCGTACTGCCACAAGCGGCCGCAGGTGCGCATGCTGATCCTTTCAGCCTTCTGTATAGGAGTCAGCGTCACTTGGGGAGTTTTCCGCAACGAAGACCAGTGGGCGTGGATACTTCAGGATGCGTTAGGCATCGCTTTCTGTCTCTACATGCTAAAAACAATCAGACTTCCTACTTTCAAGGCCTGCACTATGCTGCTGGTCGTGCTGTTCGTGTATGACGTGTTTTTTGTTTTTATAACACCACTCTTAACTGAGCTTCCCATGGTGCTGAAAGTGCCCAGGTTAAATTCGTCTCCTCTGGTCCTGTGTGACCGGCCCTTCTCTCTCCTGGGCTTTGGGGATATCTTGGTACCAGGTCTGCTTGTAGCATATTGTCACAGATTTGACATTCTCATGCAGACTTCTCGAATATACTTTCTGGCCTGCACTGTTGGCTACGGCATTGGTCTTCTCATCACATTTGTGGCTCTGGCTCTGATGCAGATGGGTCAGCCTGCCCTCTTGTACCTGGTGCCTTGCACGCTCCTCGCCAGCCTTGCGGTGGCACTGTGGCGCAAGGAGCTGCCTTTGTTCTGGACAGGAAGTGGATTTGTGCCTCCTCCAATTGTCATGGAACAAATCAACTGTACTCAAACCCCAGGACCGTCCACAGATGAACCCCAGTCCAATCCGGAGCCGCCAGACTCTGAAACGACCAATCAGAGCAAGGAAGAGCCTCCTCCACCAGCCCAAGTGGAAGTTCCGCATCTTACAGATGCATCTACTTCATAAAAACAAAAGACTCGAAGGATGCTAATATCTTTTTCATTTTTGAAGTCAGTTATATATCTGACCATATATGTAATAGACTTGAGCAGTATGAACATCTCAGTGCACTTGTTTTAAGCCTTTGAAATTGTACAGTCTGTTCGAACCGAAGAAGGAGACACAACATCTGTGCTTCATCCAACTTGCTTCAAGTTTACGTTTGATGGTATTAGGAGGGAGTCGAAGGGACAGATTATCTTCTTCACAAGGATTTCAACTCTGTGTGTTCATTTTGTTCATCTTTTTCTTTTTTTTTCTTTTTAAATCAACAGTAAATGAAACAAAGTGCAGCTATTTTAAGACAAATGTTATGATAATTCAAGACAGCTCACTGAAAATATTTCTATTTGGCTTCCAGTTGATAATGCATTACTGACGGGTTTTGTCCTTGTCATGACAGCGCTGAAGTCTCACATCCTTTAAAATACGGTGCTAATAAGGACCGAATGAACCACAGGTGTCGGGAATAATGATTTATTAGTTTCATCCCAAGTTCTGAGATGCGAATACTGTGATAAGATTAATCGTTTATATTCTGGTATGCTGTATAATTAAGAGCAGTACTGTTATACAAGGCCACATAATTTAACAAAATCTTCTTTATAGGTTTGGAATGTGATTTCAACTTTAGCTGCATTGAAATCGATCATATTCATATGCTCATGGCTTGTTTGAAAGCATTGTATTTAGAATTTGTTGTTTACTTGATGGAAGGGACGTTTGAGATCTTTAA

Function

symbol description
sppl2 Predicted to enable aspartic endopeptidase activity, intramembrane cleaving. Acts upstream of or within negative regulation of coagulation. Predicted to be located in endosome membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi-associated vesicle membrane and lysosomal membrane. Predicted to be integral component of cytoplasmic side of endoplasmic reticulum membrane and integral component of lumenal side of endoplasmic reticulum membrane.
sppl2b Enables aspartic endopeptidase activity, intramembrane cleaving and protein homodimerization activity. Involved in membrane protein ectodomain proteolysis; membrane protein intracellular domain proteolysis; and regulation of immune response. Located in several cellular components, including bounding membrane of organelle; cytoskeleton; and nucleoplasm. Is integral component of cytoplasmic side of endoplasmic reticulum membrane and integral component of lumenal side of endoplasmic reticulum membrane.

GO:

id name namespace
GO:0030660 Golgi-associated vesicle membrane cellular_component

KEGG:

id description
K09597 SPPL2B; signal peptide peptidase-like 2B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15444403_15453408.mRNA True 2377 mRNA 0.45 14 15444403 15454177

Neighbor

gene id symbol gene type direction distance location
CI01000004_15400244_15414139 NA coding upstream 30027 15400244 ~ 15414376 (+)
CI01000004_15325044_15326740 NA coding upstream 117616 15325044 ~ 15326787 (+)
CI01000004_15316323_15317231 NA coding upstream 127061 15315947 ~ 15317342 (+)
CI01000004_15291659_15296777 NA coding upstream 146556 15291659 ~ 15297847 (+)
CI01000004_15277204_15286845 SAMD7 coding upstream 157416 15277204 ~ 15286987 (+)
CI01000004_15631508_15632389 NA coding downstream 177253 15631430 ~ 15632403 (+)
CI01000004_15645965_15650241 NA coding downstream 191788 15645965 ~ 15650274 (+)
CI01000004_15687242_15691238 NA coding downstream 231085 15685262 ~ 15691277 (+)
CI01000004_15694735_15698103 SDR39U1 coding downstream 240558 15694735 ~ 15698421 (+)
CI01000004_15711867_15722470 PARP2 coding downstream 257690 15711867 ~ 15722582 (+)
G34090 NA non-coding upstream 11030 15433168 ~ 15433373 (+)
G33857 NA non-coding upstream 18597 15419261 ~ 15425806 (+)
G34061 NA non-coding upstream 172498 15271644 ~ 15271905 (+)
G34055 NA non-coding upstream 208020 15236130 ~ 15236383 (+)
G33896 NA non-coding upstream 220489 15223661 ~ 15223914 (+)
G34100 NA non-coding downstream 27086 15481263 ~ 15481530 (+)
G34101 NA non-coding downstream 27743 15481920 ~ 15482315 (+)
G34141 NA non-coding downstream 101678 15555855 ~ 15556213 (+)
G34142 NA non-coding downstream 102228 15556405 ~ 15556784 (+)
G33834 NA non-coding downstream 131889 15586066 ~ 15594375 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 352434 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1407503 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 2788692 12646838 ~ 12652570 (+)
G31865 NA other upstream 3249256 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 3776744 11666900 ~ 11667659 (+)
G34220 NA other downstream 485180 15939357 ~ 15939950 (+)
G33815 NA other downstream 609238 16063415 ~ 16066464 (+)
G34400 NA other downstream 1523151 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015728 sppl2 coding NC_007113.7 CM002886.2 37480669 ~ 37503009 (+)