CI01000004_15631508_15632389


Basic Information

Item Value
gene id CI01000004_15631508_15632389
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15631430 ~ 15632403 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15631508_15632389.mRNA
GAATAAAAGTGGACATCCTTTCCTGTTATTCACAGTTGACATTAATTGGCCTGTAAATCTTCTTTTTGTCAGCCCATCATGCCGGTGGTGTTGCGTTCCTCGCCTCTCCTGTGGGCCCGTGTGGCTGCCATGGTTTTCGCCTGTGTAGCATTCAGTGTAGCTCTATACGGAGGGAATCTAACCCACGGCACGGGTGATTGGTGCGTGTTCTGCTGGAGTTTCAGTTTTGTTGGAACTCTTCTGATAATCTTAGTGGAGATGTTTGGCCTGCAGACCCGCGCCCCTGTTTCATGGAAGAACTTTCCCATCACATTCGCCTGCTACGCCTCCCTTCTCTGCCTCTCCGCTTCCATCATATTTCCACTTTACTTCCTGAAGGGCTATGCCGGTCGCACCGAGATGATCAACTGCCGCATCGTGTCTACTGTATTCTCTTGCCTCGCCACTATCGCGTACTTAAGCGAGGTGAGTCTCAGCAAGGCTCGTCCGGGAGAGGTGGCCGGCTACATGGCCACAGCACCAGGGCTGCTAAAGGTGTGCGAGACCTTCGTTGCCTGCATCATATTCGTCTTCATCAGCGAGCCGGTATCATATGACCAGAATGCGGCGACCAAGTGGTGCCTGTCTGTGTACTGCATCTGCTTCATCTTGTCGGCAGCCATCATCGTGATGTGTGTGGGAGAGTGCACAGGTTGCCTGCCCTTCTCCTTCGCCCGCTTCCTGTCTTCATATGCCCTCCTGGCTGTGGGCATGTATCTGTCCGCCACCATCATCTGGCCCATTTATAAGTTTGACAATAAGCACGGAGGCCAGAGCCACAGACCCAACTACTGTGGCTCCAGCATCGGCCTGTGCCCGTGGGACAAGCTGCTGGCCATCTCGGTGCTCAGCGCTCTCAACTTCATTCTCTATCTGGCTGATCTCATCTACTCAGCCAGGCTGGTTTTTGTTAATGCTTAAGGGGTTTAGCGAGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15631508_15632389.mRNA True 974 mRNA 0.53 1 15631430 15632403

Neighbor

gene id symbol gene type direction distance location
CI01000004_15444403_15453408 SPPL2, SPPL2B coding upstream 177253 15444403 ~ 15454177 (+)
CI01000004_15400244_15414139 NA coding upstream 217054 15400244 ~ 15414376 (+)
CI01000004_15325044_15326740 NA coding upstream 304643 15325044 ~ 15326787 (+)
CI01000004_15316323_15317231 NA coding upstream 314088 15315947 ~ 15317342 (+)
CI01000004_15291659_15296777 NA coding upstream 333583 15291659 ~ 15297847 (+)
CI01000004_15645965_15650241 NA coding downstream 13562 15645965 ~ 15650274 (+)
CI01000004_15687242_15691238 NA coding downstream 52859 15685262 ~ 15691277 (+)
CI01000004_15694735_15698103 SDR39U1 coding downstream 62332 15694735 ~ 15698421 (+)
CI01000004_15711867_15722470 PARP2 coding downstream 79464 15711867 ~ 15722582 (+)
CI01000004_15787382_15803133 NA coding downstream 154979 15787382 ~ 15803144 (+)
G33882 NA non-coding upstream 9110 15620079 ~ 15622320 (+)
G33834 NA non-coding upstream 37055 15586066 ~ 15594375 (+)
G34142 NA non-coding upstream 74646 15556405 ~ 15556784 (+)
G34141 NA non-coding upstream 75217 15555855 ~ 15556213 (+)
G34101 NA non-coding upstream 149115 15481920 ~ 15482315 (+)
G34181 NA non-coding downstream 116246 15748649 ~ 15748926 (+)
G34183 NA non-coding downstream 119260 15751663 ~ 15752548 (+)
G34186 NA non-coding downstream 123632 15756035 ~ 15756391 (+)
G34188 NA non-coding downstream 135349 15767752 ~ 15767991 (+)
G34192 NA non-coding downstream 143856 15776259 ~ 15776513 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 539461 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1594530 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 2975719 12646838 ~ 12652570 (+)
G31865 NA other upstream 3436283 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 3963771 11666900 ~ 11667659 (+)
G34220 NA other downstream 306954 15939357 ~ 15939950 (+)
G33815 NA other downstream 431012 16063415 ~ 16066464 (+)
G34400 NA other downstream 1344925 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015729 MYADM coding NC_007113.7 CM002886.2 37750016 ~ 37755128 (+)
bowfin (Amia calva) AMCG00012018 NA coding CM030138.1 CM030138.1 8739577 ~ 8748073 (-)