CI01000004_15711867_15722470 (PARP2)


Basic Information

Item Value
gene id CI01000004_15711867_15722470
gene name PARP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15711867 ~ 15722582 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15711867_15722470.mRNA
TTTGGCAGTGGAAGGGGGACGATGATGAGTGGGAACCGTATCCTCCAGCTGTCTGTGTCCAGCTGGATTCAGCAAAGCAGGCTGGTGAAAAGTCGGTGTCACTGGCTCTTGGACCTGGTTATGAAGTGGATCTTGTGAAAATGACTCAGACTAACACTGTCACCAAGTACAAGCGAAAAATACGCCTTCAGAAAGTGAAGTCAGAAGCTCCGGATGCTTTGAATGGTAATAATGGAGCTGCAGGTGTTGTTCCGATTAAAGAAGAGAAAGAGGAGGAAGAGGAGCAACCCGTTTCCAAAAGACGCAAAGAAGGGAGGAGTCAAAAAGTGAACAAAGCCAAGCCCCTTGTAAAAGAGGAATGTGAAGAGGTTGTGAAGACGGTGGTTATGAAGGGAAAAGCCCCGGTTGATCCGGAATGCAAGGCTAAAATTGGAAAGGCTCACGTCTACAGCGAGGGCGCCAATGTGTATGATGTTATGCTGAATCAGACTAATCTTCAGTTCAACAATAATAAATATTACCTGATCCAGCTTCTTCAGGATGACAGTGCAAAAGCGTACAGTGTGTGGATGCGGTGGGGACGAGTGGGTAAAGTAGGACAGAACAGCTTGGTTAACTGTGGGGGGAATCTAGCTCAGGCCAAAGACACCTTCAAAAAGAAATTCTTTGACAAGACCAAGAATGAGTGGGAGCATCGAGCAAATTTTGAGAAAGTTGCAGGAAAATATGACATGGTATTTGTAGACTACAGCATTGAAGACAAGGAGAAGGACAAGGATGTGATAGATTCTTCTATTCAACAAAAGCAATGCCAGCTGAACAGCAAGGTCCAGTCTCTCCTAGAGCTCATATGTGACATTAAAGCCATGGAGGAATATGTGCTAGAGATGAAGTTTGATACCAAAAAAGCCCCGCTTGGAAAACTAACTACAGAGCAAATAAGAGCCGGCTACTCCTCCTTGAAGAGGATTGAAGAGTGTTTAAAGAGGAAGAATAGTAATAAACAACTCTTGGAAGCATGCAACCAGTTTTACACTCGTATCCCCCATGACTTTGGGTTGCGGACACCCCCCATAATACGCACAGAGGAAGAGCTAAAGGAGAAAATCGCTTTGCTTGAGGCTCTAAGTGACATTCAGATAGCAGTGAAAATGGTTCAGTCCAGTGTTCAGAGTGATGAGCATCCTGTGGACAGACATTATCGCTCTCTACAATGTCGACTGGAGCCACTGGATTCTCACAGCAATGAATACAAGGTTATAGAGAAGTATCTTCAGTCCACTCATGCACCCACCCATACTGACTACACAATGACTATTCTGGACATCTTTGCTGTGGAGAAAGAGGGCGAGAAGGACATCTTCCACTCTGAGATGAAAAACAGGATGCTCCTGTGGCATGGCTCTCGTCTGACAAACTGGGTGGGGATCCTGAGTCAGGGGCTGCAAGTGGCCCCTCCAGAGGCTCCCGTGACCGGATACATGTTTGGTAAGGGAATCTACTTTGCTGACATGTCATCTAAAAGTGCCAATTACTGCTTTGCCAATCAGAAGAACAACCAGGGACTCTTGTTGCTGAGTGAGGTTGCCCTTGGGGATAGTAATGAACTTTTGGATGCAGATTACAGTGCTGACCAACTGCCTTCTGGGAAACATAGCACAAAAGGCCTGGGGCAGACTGCGCCCGACCCAAATAACTATGTTACATTGGATGGTGTGACCGTACCCATGGGGCCCTCAGTGAAGACCGGGGTGGGGCAGAAAGGAGGTTACACCCTCCTTTATAACGAGTACATTGTTTATAACCCTGATCAGGTACAGATGAGGTACCTCCTCCGAGTTCAGTTTAACTTCTCTTCGCTGTGGTGAGGCATTAAGCACACTGACAGTCTTTACAGTCTGAGATGAAGGACCTTCCCTATAGTTATACAGCATGTAGCTCATATTTCATGACTTTGAATAGACTAAAAAAAATCCTGAA

Function

symbol description
parp2 Predicted to enable NAD+ ADP-ribosyltransferase activity and protein ADP-ribosylase activity. Predicted to be involved in double-strand break repair and protein poly-ADP-ribosylation. Predicted to act upstream of or within protein ADP-ribosylation. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in brain; head; and proliferative region. Orthologous to human PARP2 (poly(ADP-ribose) polymerase 2).

NR:

description
LOC100007906 protein, partial

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15711867_15722470.mRNA True 1980 mRNA 0.46 16 15711867 15722582

Neighbor

gene id symbol gene type direction distance location
CI01000004_15694735_15698103 SDR39U1 coding upstream 13446 15694735 ~ 15698421 (+)
CI01000004_15687242_15691238 NA coding upstream 20590 15685262 ~ 15691277 (+)
CI01000004_15645965_15650241 NA coding upstream 61593 15645965 ~ 15650274 (+)
CI01000004_15631508_15632389 NA coding upstream 79464 15631430 ~ 15632403 (+)
CI01000004_15444403_15453408 SPPL2, SPPL2B coding upstream 257690 15444403 ~ 15454177 (+)
CI01000004_15787382_15803133 NA coding downstream 64800 15787382 ~ 15803144 (+)
CI01000004_15825817_15827475 TEP1 coding downstream 103235 15825817 ~ 15827603 (+)
CI01000004_15859240_15861471 APOL1 coding downstream 136658 15859240 ~ 15863449 (+)
CI01000004_15867404_15875293 NA coding downstream 144403 15866985 ~ 15875304 (+)
CI01000004_15892502_15900203 DCAF8 coding downstream 167791 15890373 ~ 15900852 (+)
G33803 NA non-coding upstream 901 15622928 ~ 15710966 (+)
G33882 NA non-coding upstream 89547 15620079 ~ 15622320 (+)
G33834 NA non-coding upstream 117492 15586066 ~ 15594375 (+)
G34142 NA non-coding upstream 155083 15556405 ~ 15556784 (+)
G34141 NA non-coding upstream 155654 15555855 ~ 15556213 (+)
G34181 NA non-coding downstream 26067 15748649 ~ 15748926 (+)
G34183 NA non-coding downstream 29081 15751663 ~ 15752548 (+)
G34186 NA non-coding downstream 33453 15756035 ~ 15756391 (+)
G34188 NA non-coding downstream 45170 15767752 ~ 15767991 (+)
G34192 NA non-coding downstream 53677 15776259 ~ 15776513 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 619898 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1674967 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 3056156 12646838 ~ 12652570 (+)
G31865 NA other upstream 3516720 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 4044208 11666900 ~ 11667659 (+)
G34220 NA other downstream 216775 15939357 ~ 15939950 (+)
G33815 NA other downstream 340833 16063415 ~ 16066464 (+)
G34400 NA other downstream 1254746 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G332210 NA misc CI01000113 null 47990 ~ 49485 (-)
mexican tetra (Astyanax mexicanus) G275401 parp2,LOC106941517,LOC102793357 non-coding NW_019172283.1 APWO02001881.1 512964 ~ 529917 (-)