Gene
RNA
| Item | Value |
|---|---|
| gene id | G33803 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 15622928 ~ 15710966 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU38324 | False | 576 | lncRNA | 0.41 | 3 | 15622928 | 15710966 |
| TU38328 | False | 358 | lncRNA | 0.47 | 3 | 15647593 | 15710966 |
| TU38327 | False | 358 | lncRNA | 0.46 | 3 | 15650855 | 15710966 |
| TU38325 | True | 461 | lncRNA | 0.48 | 3 | 15684550 | 15710966 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_15444403_15453408 | SPPL2, SPPL2B | coding | upstream | 168751 | 15444403 ~ 15454177 (+) |
| CI01000004_15400244_15414139 | NA | coding | upstream | 208552 | 15400244 ~ 15414376 (+) |
| CI01000004_15325044_15326740 | NA | coding | upstream | 296141 | 15325044 ~ 15326787 (+) |
| CI01000004_15316323_15317231 | NA | coding | upstream | 305586 | 15315947 ~ 15317342 (+) |
| CI01000004_15291659_15296777 | NA | coding | upstream | 325081 | 15291659 ~ 15297847 (+) |
| CI01000004_15711867_15722470 | PARP2 | coding | downstream | 901 | 15711867 ~ 15722582 (+) |
| CI01000004_15787382_15803133 | NA | coding | downstream | 76416 | 15787382 ~ 15803144 (+) |
| CI01000004_15825817_15827475 | TEP1 | coding | downstream | 114851 | 15825817 ~ 15827603 (+) |
| CI01000004_15859240_15861471 | APOL1 | coding | downstream | 148274 | 15859240 ~ 15863449 (+) |
| CI01000004_15867404_15875293 | NA | coding | downstream | 156019 | 15866985 ~ 15875304 (+) |
| G33882 | NA | non-coding | upstream | 608 | 15620079 ~ 15622320 (+) |
| G33834 | NA | non-coding | upstream | 28553 | 15586066 ~ 15594375 (+) |
| G34142 | NA | non-coding | upstream | 66144 | 15556405 ~ 15556784 (+) |
| G34141 | NA | non-coding | upstream | 66715 | 15555855 ~ 15556213 (+) |
| G34101 | NA | non-coding | upstream | 140613 | 15481920 ~ 15482315 (+) |
| G34181 | NA | non-coding | downstream | 37683 | 15748649 ~ 15748926 (+) |
| G34183 | NA | non-coding | downstream | 40697 | 15751663 ~ 15752548 (+) |
| G34186 | NA | non-coding | downstream | 45069 | 15756035 ~ 15756391 (+) |
| G34188 | NA | non-coding | downstream | 56786 | 15767752 ~ 15767991 (+) |
| G34192 | NA | non-coding | downstream | 65293 | 15776259 ~ 15776513 (+) |
| CI01000004_15091390_15096502 | GA45B, GADD45B, GADD45BB | other | upstream | 530959 | 15091200 ~ 15097173 (+) |
| CI01000004_14036114_14036449 | KIAA0040 | other | upstream | 1586028 | 14035393 ~ 14039142 (+) |
| CI01000004_12646972_12652534 | NA | other | upstream | 2967217 | 12646838 ~ 12652570 (+) |
| G31865 | NA | other | upstream | 3427781 | 12192130 ~ 12197418 (+) |
| CI01000004_11666900_11667179 | NA | other | upstream | 3955269 | 11666900 ~ 11667659 (+) |
| G34220 | NA | other | downstream | 228391 | 15939357 ~ 15939950 (+) |
| G33815 | NA | other | downstream | 352449 | 16063415 ~ 16066464 (+) |
| G34400 | NA | other | downstream | 1266362 | 16971995 ~ 17025976 (+) |
