panx1b (panx1b,LOC107746435,LOC107663420,LOC107734119,LOC107548450,LOC107596208)


Basic Information

Item Value
gene id panx1b
gene name panx1b,LOC107746435,LOC107663420,LOC107734119,LOC107548450,LOC107596208
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13978210 ~ 13983728 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238328.1
CTAGCGGTGCACTtgacacatactgtacatttcattttatttcaacaatGGCAATAGCACGCGTTGCTACCGAATACGTGTTTTCTGATTTTTTATTGAAAGAGCAGAGTGACTCTAAGTACAAAGGCGTGCGACTGGAACTCGCAGCAGACAAACTGGTCACTTTTATCGCGGTCGGGCTTCCTTTGTTACTCATCTCACTCGCCTTTGCACAAGAAGTCTCTGTGGGTACTCAGATCACATGTTTTCCACCCACTAACTTCACATTGAGACAGGCTGCATATGTGGACTCCTTCTGCTGGGCTGCAGTAGAGCATCACCCTACAGAAAATGGGGCTGATAGCGCCCCCCTTCATCTACACAAGTTCTTTCCTTATATCCTTCTGCTGGTTGCCACCCTCATGTATATTCCTGCTCTCTTCTGGCGCTTCACGGCTGCCCCGTCCCTATCCTCTGACCTCAGTTTTATCATGGAGGAACTTGACCGTTGCTACAACCGTGCCATCCGCCTAGCCAAGAGCCTCACAACCAAACAAGACAAAGACATTGCAGAGGACCCACACAGtggtCTTGAAATGACTGAAGCTTGTTTTAAGTACCCTCTTGTAGAGCAGTACTTAAAGACAAAGCGTTCATCTTGGGCTTTAGCAGCAAAATATCTGCTTTGCCGGGTTTTAACATTCCTCACTTTATTGCTGGCCTGCTTTTATCTGACCTACTACATCTTTTGGGTGTCACCCAGTGATCAGTTCTCCTGTCACCTGCGCAGAGGTATATTAGTAAACGAGAGTGTGGTGCCAGATGCGGTTCAGTGTAAGCTGGTGGCAGTGGGTGTTTTCCGCCTTCTCAGTTGCATGAATCTGGTGGTGTATTTACTGTTAGTACCGGCCGTGGTTTACTCTGCCTTCCAGCCTGTTCGTCAGCACCAGAACGCTCAGTTTCTCCGTCCATACCACCTACTGCCTGCTTTCGGTCACGTGCTGGATCTGCAGCCTACCACCCGCCGTTATGATGACTTCAGCATCTACCTGCTCTTCTTGGAGGAAAACTTGAGTGAGCTTAAGAGCTACAAATGTTTGCAGGTGTTGGAGCTGCTGTCAGAGGGAGAAGAAGCAGCATTTGACACCATGTGTCTCCTCAGGACTCTTGGACAAGTGAGGACTGACATGGTGGACAGAAAACAAGCCCAAACTGTAAATGGAAGCGCAGAGATAGAAATCTCTCAAATAAAGGATGCCTCTTCTGTTCTGATGGATGATGGAGTACAGACAGAAAAAAGCTGCAGCTGTGAGAAAGATGTAAGACACAGGGTGGTCTAACATacaacaaaatcaaatcaaatcaaatgacaAACAATCAGTTTACACGTATTCTGAATATGAAGAAAATGTACGATTATATCATGCTTGAATATAACCGATTTACTAATGAACTAACTGAAGAATTAAGCTGCACAAGCTTTTTATGCCTTACGTTAATAGAAATggtatgaatgtttttttttaaacttgatgAAGTTATTATTTGTGAGGTTGATGAATGTTAAAACCCTATTGTATGcattatgaaaacaatattacaaCATGTATTCTGGGGTGTCCTTTGTAGGTCAGTATAGTTGCAActatgagagagaaagaaactaaataattaaGATGCTAATGTTAGAATATTAACAACTAACTTCTGTCAATGTTGCCTCTTggtaacaaacaattaaaataataattgtaatatggctgcaaaaatataatgtgaCCAAGAAATCATCAAAGTCTTCTCTTCTTTATAAACCTTCAAATGCTAATCTTATATGCATCATGTATTTGCAAAACTGTGGTACAGAAAATGGGGTTGTTTCCCTGAGGCAAcatcattaaaaagttaaaatataaaggATGTATTCATGTAATATCTAAATGAATGGAAATGGTTTTATGATGCATGACAGCTTAATATTTGGCTGAGTAAAACTTTTCTAGAGGTAATAATGCACTGCCTATATGCAAAAAGCAAtaatcaaatatacaaaatataatgtatgaTATGTATAATACTGttaagtttaatattttgtaattttttatttatttgatagaaATCAAGAGATgtgtttaaatcattttgtaGTTCTAATAGTAAATTTAGTTTTGTGTCTCCTTAGTTGTTAAATCGCATGTCTTCAAATCTGAGCTGTTCAAAAATGGTcctaaaatgttacttttaatggACTTCATTCAGGGATGTAGAATGCCAgcttgtaatgtaataaaaataactctCTGTTGTCATGGA
>XM_043238330.1
CTAGCGGTGCACTtgacacatactgtacatttcattttatttcaacaatGGCAATAGCACGCGTTGCTACCGAATACGTGTTTTCTGATTTTTTATTGAAAGAGCAGAGTGACTCTAAGTACAAAGGCGTGCGACTGGAACTCGCAGCAGACAAACTGGTCACTTTTATCGCGGTCGGGCTTCCTTTGTTACTCATCTCACTCGCCTTTGCACAAGAAGTCTCTGTGGGTACTCAGATCACATGTTTTCCACCCACTAACTTCACATTGAGACAGGCTGCATATGTGGACTCCTTCTGCTGGGCTGCAGTAGAGCATCACCCTACAGAAAATGGGGCTGATAGCGCCCCCCTTCATCTACACAAGTTCTTTCCTTATATCCTTCTGCTGGTTGCCACCCTCATGTATATTCCTGCTCTCTTCTGGCGCTTCACGGCTGCCCCGTCCCTATCCTCTGACCTCAGTTTTATCATGGAGGAACTTGACCGTTGCTACAACCGTGCCATCCGCCTAGCCAAGAGCCTCACAACCAAACAAGACAAAGACATTGCAGAGGACCCACACAGtggtCTTGAAATGACTGAAGCTTGTTTTAAGTACCCTCTTGTAGAGCAGTACTTAAAGACAAAGCGTTCATCTTGGGCTTTAGCAGCAAAATATCTGCTTTGCCGGGTTTTAACATTCCTCACTTTATTGCTGGCCTGCTTTTATCTGACCTACTACATCTTTTGGGTGTCACCCAGTGATCAGTTCTCCTGTCACCTGCGCAGAGGTATATTAGTAAACGAGAGTGTGGTGCCAGATGCGGTTCAGTGTAAGCTGGTGGCAGTGGGTGTTTTCCGCCTTCTCAGTTGCATGAATCTGGTGGTGTATTTACTGTTAGTACCGGCCGTGGTTTACTCTGCCTTCCAGCCTGTTCGTCAGCACCAGAACGCTCAGTTTCTCCGTCCATACCACCTACTGCCTGCTTTCGGTCACGTGCTGGATCTGCAGCCTACCACCCGCCGTTATGATGACTTCAGCATCTACCTGCTCTTCTTGGAGGAAAACTTGAAGCTGAATGCTGGTGTCAGCGAGTGAACACTTACACGTTTGTCTGTCATGTGTGTATGCAGGTGTTGGAGCTGCTGTCAGAGGGAGAAGAAGCAGCATTTGACACCATGTGTCTCCTCAGGACTCTTGGACAAGTGAGGA

Function

symbol description
panx1b Enables voltage-gated channel activity and wide pore channel activity. Predicted to be involved in cation transport and cell-cell signaling. Predicted to act upstream of or within ion transport and positive regulation of interleukin-1 production. Located in cytoplasmic vesicle; perinuclear region of cytoplasm; and plasma membrane. Is expressed in several structures, including heart; integument; liver; nervous system; and pleuroperitoneal region. Orthologous to human PANX1 (pannexin 1).

NR:

description
PREDICTED: pannexin-1-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005921 gap junction cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022829 wide pore channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238328.1 True 2295 mRNA 0.40 7 13978210 13983728
XM_043238330.1 False 1193 mRNA 0.49 6 13978210 13982302

Neighbor

gene id symbol gene type direction distance location
epd LOC107596209,LOC107661259,LOC107734118,LOC107663416 coding upstream 1190 13975414 ~ 13977020 (+)
myo1ca LOC107746384,LOC107548455,LOC107663411,LOC107734145 coding upstream 13171 13944782 ~ 13965039 (+)
dpf2 dpf2,LOC107596122,LOC107548457,LOC107734150,LOC107746382 coding upstream 40879 13926712 ~ 13937331 (+)
cdc42ep2 LOC107548458,LOC107663424,LOC107746383,LOC107734144,LOC107661192 coding upstream 54297 13916335 ~ 13923913 (+)
LOC122346121 LOC107746380,LOC107734132,LOC107596124,LOC558044,LOC107663413 coding upstream 65606 13855423 ~ 13912604 (+)
tmprss4b LOC107599211,LOC107663417,LOC107746388,LOC107734130,LOC107661196,LOC107596117 coding downstream 26595 14010323 ~ 14014376 (+)
pafah1b2 pafah1b2,LOC107661198,LOC107734127,LOC107663423,LOC107599209,LOC107746392 coding downstream 49719 14033447 ~ 14037169 (+)
apoa1a LOC107663408,LOC107599208,LOC107746394,LOC107661262,LOC107734125,LOC107596115 coding downstream 55242 14038970 ~ 14041059 (+)
LOC122344888 LOC107746395 coding downstream 73535 14057263 ~ 14059780 (+)
si:ch211-284e13.5 LOC107746441,LOC107599206,LOC107661202 coding downstream 104703 14088431 ~ 14092482 (+)
G36332 NA non-coding upstream 3451 13974532 ~ 13974759 (+)
G36198 NA non-coding upstream 245754 13731969 ~ 13732456 (+)
G36191 NA non-coding upstream 256644 13720785 ~ 13721566 (+)
G36168 NA non-coding upstream 329672 13647926 ~ 13648538 (+)
G36141 NA non-coding upstream 397412 13566977 ~ 13580798 (+)
G36405 NA non-coding downstream 15372 13999100 ~ 14000337 (+)
G36406 NA non-coding downstream 16798 14000526 ~ 14003531 (+)
G36408 LOC107746439,LOC107663381,LOC107599230 non-coding downstream 22043 14005771 ~ 14007402 (+)
G36420 LOC107663407,LOC107599223,LOC107746393,LOC107661199 non-coding downstream 63049 14046777 ~ 14047494 (+)
G36503 LOC107599196,LOC107663386 non-coding downstream 337828 14321556 ~ 14326754 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 1170859 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 1272965 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 1449420 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 1722538 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 2035100 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 369 13984097 ~ 13985706 (+)
G36495 NA other downstream 306692 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 316315 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 349295 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 363834 14347562 ~ 14349991 (+)

Expression


Co-expression Network