pafah1b2 (pafah1b2,LOC107661198,LOC107734127,LOC107663423,LOC107599209,LOC107746392)


Basic Information

Item Value
gene id pafah1b2
gene name pafah1b2,LOC107661198,LOC107734127,LOC107663423,LOC107599209,LOC107746392
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14033447 ~ 14037169 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238797.1
TTGTGTAGGTTTTTCAGCAACGTTTTAATTGTATTCATAATTGAAAGGCCTTAGACATCCACGTATCAAACATGATACAGCTGTATAAAGAGTTACCAAATTGAAGTCCTTGTATATGGACCTGTTCTAAAACAAGCTGAATGAAATATAAGCACGATACCGCTTCGATTGTAACATTTCTTCCTATCACAGACCTCGCCTGTATTTTGCCTTCATTAGGCGGGACGGCGCTGAATGGGAAGTGCGTGACGATGGCTGGAGGCGGAAGTGAGGCTTTCCAGAAAGTGCGAGGGCGGTTGCGCAGGGAAGTGGGGAGGTGGTTGGCTGGATGCTACTTGGTTTACATAACCCAAACATTTACTGTGATTTCTTGAAAAGACACCGCGCTGTACGCCCTCACAATCGAAACGTCCAACGCCATTGTCACTGTGCAGCCCGAGTCAGGCAAAGGTCGCCTTGCTTTCTAAGGGAGAGCTGGAGAAAGCAAAGTCGAGGTGCGCGGCAGCAGAAACGCTCATCTGCATCTTCCACCGGACAGTCGGTCGACTGCGGTGCTGCTGTACGTGACCGAGGGAGCCCTGCCCTGCTGCACGCCAGCAGCTCGCTCGCCGCAGACGGGATTTGCAAACACTGCAAGCCAGaCCCAGAATGAGCGCCGAGGAGAATCCCGCAGCTGAACCCGCGCCCGTCATCGACGTGCAGGGAGACGGACGCTGGATGTCACAGCATAACCGGTTCGTGCAGGAGTGTAAGGATGCAGAGCCTGACGTTCTGTTTGTGGGGGACTCCATGGTGCAGCTAATGCAGCAGTATGAGGTGTGGAGGGAACTCTTCTCACCTCTCCATGCTCTGAATTTCGGGATCGGTGGAGACACAACCTGTAATGTGCTGTGGAGACTACAGAATGGAGAACTGGAGAACATCAGACCCAGAGTGGTGGTTTTATGGGTGGGAACTAATAATCATGAGCACACTGCGGATCAAGTTGCTGGAGGAATATTGGCCATCGCACAGTTACTTCTGTCTCGTCTCACCAAGTCCaaaattattgttttgGGCCTGTTGCCGAGGGGAGAGTTTCCTAACCccctgagagagaaaaatgcaTCAGTAAATAATCTACTTCGCGCATCTCTTCCTCGACTCGGCCCTGTTCAGTTTATTGATGTGGGAGGTAGTTTTGTCCACTCAGACGGGACTATTTCCTCTCGAGACATGTTCGACTTCCTACATCTGACTGCCGGTGCATACAGGACCATGTCAACCACTCTCCATGAGCTGCTGCTTCAACTGTTGGAGGAAACGCCTCAGGAGAGGCGAGCCTCGCTGGTCTAGGAAGGCCCACCACATTGGTCAATCACTGAAGAGGCAGGGTTAAGACACGTTGGCTATTCATAATgtacttaaaatacttttatttagcaagacaAAGAAAAGTACAAAACGTGGACGTAGGACAGTGGCCAGTTTTATATGATCCATagaaaatgtgtatatgtatctAAGATGCATAACAGACAGCAGCAAGAGAAAGACTAGATAATTTTCATGGCGAGAAATAGTTTTTCTTAGGACGTGTTGCTTTGCGGTGGGACCAGATTCTCTTCAAAATCCCATTGTCACAGTCTGAACAACCTTTAATAGTAGCACTTACTCTGCCAGCTTCTCCGTGCCTTCATACATGCACTCGGTCTCACTCACAGTGTCACGATGACAGCAAAATGATTCAGACACACAAGAGAAATCATGCCTTTGAAACATGTACGTCTTGCTCCCGATTTCAAGTTCTTTGGCACAGTTGTGTCCGAGACCGCCTCTTTCTCTTTTGCCCTTTCACATTCACAATAACACAATATGATAGAGTGAAAACCATCGAACCATGTCGTACCTTGTGTGTGAGAGTTCGAGTGTGAGAAAGCTCCTCTTCTTAAGCATCTAATGCACAACCGTGAGGTTTCCAGTGTTAATATTTATCTCACTTGCATCCCTGTTTTTGTGTACGTGTCCATGCGCTCTATAaagtattatgtaaataattaagtGTGAGTATGGGAGAGCCAGTGGGCAAGAAGCGATATATAAAGTTGTGCGTGCGTGcgtatgtacatataaatataatctgtTAGTATTCATGTACAGTACTCCGTGCAAAGTGCTTACATAGCTGGTGCTGGTgtatgtgaatgtttttgtgttcgAGTGTAAGAGATCAACCATCGATAATTATTTGTTTGGCCCGCAAAGTGTGCACAATTACTGCGGCACAACTGCCACTCGCTTCAGATCCAAGCATTCCAATAAATCAGCAGGGATCGAA

Function

symbol description
pafah1b2 Predicted to act upstream of or within lipid catabolic process. Human ortholog(s) of this gene implicated in lymphoma. Orthologous to human PAFAH1B2 (platelet activating factor acetylhydrolase 1b catalytic subunit 2).

NR:

description
PREDICTED: platelet-activating factor acetylhydrolase IB subunit beta

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K16795 PAFAH1B2_3; platelet-activating factor acetylhydrolase IB subunit beta/gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238797.1 True 2317 mRNA 0.47 6 14033447 14037169

Neighbor

gene id symbol gene type direction distance location
tmprss4b LOC107599211,LOC107663417,LOC107746388,LOC107734130,LOC107661196,LOC107596117 coding upstream 19071 14010323 ~ 14014376 (+)
panx1b panx1b,LOC107746435,LOC107663420,LOC107734119,LOC107548450,LOC107596208 coding upstream 49719 13978210 ~ 13983728 (+)
epd LOC107596209,LOC107661259,LOC107734118,LOC107663416 coding upstream 56427 13975414 ~ 13977020 (+)
myo1ca LOC107746384,LOC107548455,LOC107663411,LOC107734145 coding upstream 68408 13944782 ~ 13965039 (+)
dpf2 dpf2,LOC107596122,LOC107548457,LOC107734150,LOC107746382 coding upstream 96116 13926712 ~ 13937331 (+)
apoa1a LOC107663408,LOC107599208,LOC107746394,LOC107661262,LOC107734125,LOC107596115 coding downstream 1801 14038970 ~ 14041059 (+)
LOC122344888 LOC107746395 coding downstream 20094 14057263 ~ 14059780 (+)
si:ch211-284e13.5 LOC107746441,LOC107599206,LOC107661202 coding downstream 51262 14088431 ~ 14092482 (+)
hsd20b2 hsd20b2,LOC107596111,LOC107661247,LOC107734140,LOC107663385 coding downstream 86940 14124109 ~ 14130049 (+)
gnb2 gnb2,LOC107663406,LOC108428986,LOC107661206,LOC107746402 coding downstream 108800 14145969 ~ 14156534 (+)
G36408 LOC107746439,LOC107663381,LOC107599230 non-coding upstream 26045 14005771 ~ 14007402 (+)
G36406 NA non-coding upstream 29916 14000526 ~ 14003531 (+)
G36405 NA non-coding upstream 33110 13999100 ~ 14000337 (+)
G36332 NA non-coding upstream 58688 13974532 ~ 13974759 (+)
G36198 NA non-coding upstream 300991 13731969 ~ 13732456 (+)
G36420 LOC107663407,LOC107599223,LOC107746393,LOC107661199 non-coding downstream 9608 14046777 ~ 14047494 (+)
G36503 LOC107599196,LOC107663386 non-coding downstream 284387 14321556 ~ 14326754 (+)
G36507 LOC107663397,LOC107567468,LOC107599188,LOC107746779 non-coding downstream 304754 14341923 ~ 14342507 (+)
G36509 LOC107567468,LOC107752360,LOC107661217 non-coding downstream 305995 14343164 ~ 14343769 (+)
G36510 NA non-coding downstream 308715 14345884 ~ 14346835 (+)
ins ins,LOC107596207 other upstream 47741 13984097 ~ 13985706 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 1226096 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 1328202 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 1504657 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 1777775 12249138 ~ 12255672 (+)
G36495 NA other downstream 253251 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 262874 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 295854 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 310393 14347562 ~ 14349991 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other downstream 608776 14645945 ~ 14652911 (+)

Expression


Co-expression Network