G42551


Basic Information

Item Value
gene id G42551
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 4311809 ~ 4316111 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU62945
ttttgaactCTTGTTTGCTGAATCCAATTCTAGCTAAAACTATCAAGCTGATAGGAAAAGCTTAAATCAGGAAATTATACTTGCAAATCCAAATTTGGCCCTTCAAAcccatttcttaaaatattctaaaaactATGACCGTATCTATTTTTGTGACTGGTTTAGGTTGAAAAATAACGTGATGTTAGTACCCCAAAAGGcgtattgcatttaatatgattgctaaaaaaatttaataaaataaatgtgtatgttttacttaaaatatttaatatacttaaaattCAAGTAAAACATATCaagtatattattaaataatgaataaaatgtacactTAATTATATTGAAGTAATGTTAttggttgcatttatttatttttttaagtcatatCTCATATGAAACCAACATGAGAACAAaatcatactatatatatatatatatattttttttaatgtgcctGCTGgtcattgttcattttaaaacaaaagaatgcatctgtaaactttttttttttcaaatgtgagGAGTGCAAGAACTGGTCCTGTGTGAACGTTGTAACTGTAGCAGCGTAAACTACCCTGGGCTGAAACATTGTGATAACATGAGAGAAACTAGCTTTTCGCTGTCAGTAAGAGTAACTATAGCAACGAGTCTGCATGTGGTAATCGTTTTTCAGATAATATGATTACACTCCAAGCAAACGTTTACGGTTTTCTGTTGGTGAGTAAGAAAGTCTACCTCCATTGTGTGGAGTTACTTAGGAATGATTTCATGCGGCTGTTCCAGATCATGATATCTGGGAGTGAAGGACATGGAAAACCCGCTCACACAATAGACCTACTGTATTAGCAGTTCTCTCTCCGAGGCCCCCTTCAGTCATTTACACACAGGCAGGCCCTTGTTGTTTGCTCTTGCCCCTTTTAACGTCTTTCTTGTATAATGCCATGTGATTTTGGGCCCGCCGTTGCCAACCCTGGGTTGCTGTGGCAGTATTTGAAGGAATTTCTCCACATCCAGTATAATGTGCAAAATTTCTGGTCTGCAGAGTTTTAAAGTGCCAGTTCGTAGAACTAAAgccacatttattttacatttaagcatTACTCGGTAGGATGGTGTACAGACATGCTACACGAAAAGTAGGCAGTGTATGTTTGTAATGTATGTACTGttcaaattttctttttgatgcTGAAATGTTTGCACATTTTGAGACCATGatttttacactgattttaaTACTTTTGCCAGTGTTCGTCAgtcattctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtaagcAATGTGCGGTCTTGCGTGTCTGAATGCTTGTTTTCTGTTCAAACGGATGTGAGAGAAAATGGTTGCCCTGGTTACCAGCCTTGTTGGTTAGGTCGGTCACATGGTGTCACTCACTGATGTTAAAGTCTGCTCTCGTATGTGGCGAGTCCATTGCCACTGTTATGCCGCAACTCGTTCCTCAAACAGACTTGCGAAATTAACAGACAAATGATGGCTGAAAATGAAAGCCGAATGTCTAAATACTGACTGGTGCCAAAGAAACTGACTTGGACCAACATGACTGGTATCCTGGAGTTTGTTGTAAAGCCAATTGAGAATCTTCCTACTGGAATGTAATGtcagagtttttgtttttcaccacTAGGTGGTATCATTCAGCTATTTGCCTGTACATAAATTGTTGGATTCCCCCCTCTCTCCAGTTTAACAGTAACGTCCCACAGCTGCAGGATGCATTGTTTGCATATGAAAGTAATTACAGGAAGTTCTCGGTCAACTCAAACAGGCTGGATTCGTCAGTGAAACACGCCACTGCTGCCACTCCAGGGTCATGAATGcactttgtatttgtttgtgtgagtgttatGTCGTCTGAGTGCGTTTGACTGTCTGTTTCAGAGACAATTCTTTTCTGCGTGCCCGTTGAGTGAGATTATTGCCAGCGCACTCAATGCCTTGCGCCTTGTACAACTGATGAcagaaaagttaaaaaaatagaaaaaaaagtttagaacTCTGaaatgtacgttttttttttttgtttgtttttagacagTACACTTATCTGGTACAGAACTTATATCTGTTGTTTGTCCTCTTTGTCTATTGTATGAGAAAAGCCATGTTTATAATTCAATTTGGTTTGTGACCAATAAGCCTGTTTATATCAAATCTGTATATCAGTGGTacgcatattttttttatatatatatttttattttcagtttttttttaactcgaAATTCTAAGCATGATTGGCATCGTAAAGGCCCCCCGGGGCTCTGTGGTCTGCTGATGGCAGGACTGATCGGCCTATTTGCAGGATGACATCATGAGATTGTCTATGACGGCTGGCACTTTGCAAAAGTGTTgctaatgatgatgaaaataaataataaatgatatttatttcacatttcatgGTGCTATGTTGATTGCTCGAGACACATGTGTCATGTATgttttgtgaacaaaaaaaaaactaaagactagattagtttaaaatgtttgccaAACACTAACTATATCACAACCTTCAAAAGTTGAACCTGCGGAAGCATGTTGAGGTATGtaaactttttacatttctggaaaatatttgaaatggaaacCGTTTCAGTGTGAAGTGACGTTAAGTTCTGTGATTTTTAACTTTGAAAAGAGATTTGTAGCTATGTAACCATTGTAACTATGAAAGAAGCAATGAGGAAGGCTGCATACATTGCCAAAACAGCTGATTGTTGGActgcgaggaggaggaggagtttaTTGGCATTACAGCACACTGGCACTCTTGCGTTTAAAACAGGCGAAGGGCTCACATGCATTCGATCTCTTGGCATGTGCAATGAATGACAGAATATGGAATCTGTGCAAATATAGTCAGAGCCACAACAGACAATGGTTAAAATTATAAGGCATTTCATGTGTTTCGGACCAGAAGAAAACAACATCACTACTGAAGAGGAAACTGAGGAAATAACCACTGGAGGAGGAGAAGATGATGACCCTGGTGAGATGGAAGTGGAATTCATCGATGTTGAAGCCATTTTGGACGAGGATGATGGCCTTCAGTACCAACTGCCAAAGCATCACCGACGCTCATTTTGATTTCTACGGTGGATGTCAAAAATGCAAACCGAGCAGAAGCCTTCAAGAAGCTGTCAAGATCAGGCTCTCTGAAACAAGACTTGAAGGTCCACTATTGCTGCAGAGGTTGTTGAAGAGCACTGTAAGCTGTTACAGCCTAATGCAACAAGATGAAACTCATTTTATTTGGCTGTGGAGTGTATTGTGAAAATCCTTAAAGATCAAGGAGAAAGGCCAATAAAAGCGGTCTGTTCTGCATTTCTAAGTTCCCATGTGCAGTCCAGCAGAAATGAGCTGTTTTTAGGAGAATATACTTCCACAATGAGCCCCGTTGCAAACATGTTACAAGGAGATTCTAACTTTCAGATGGGATGGCTTTGTTCTACCATTTCCACCCTCATATCAAAACTTGAGAAAACAAGAGCGTCACTGAgattttgcatctgaaagctGCAGCCATAATTCATCCAAAGTTCAAAACATCTTGGACCAGTGATGACATTCTCAAACTTGGCAATCATTATTGGGAAAATCTTCCTAATTGTGATGCGAGTCTTATGATGCAAGGATTTCTTCTCTAATATCACTCATGAGACATCCAAACAACTGCATACCTATCACGAACAGCGGAAAGGATTACATTGTTGACATCTTGTCCAGCCCTAGCCAACCTGTCGCTGAAGCTGAGCGCAGCCCGTGAAAGGCTTTCCAGTGCTGCTGGGCTGATCTTCACCCCAAGAAGGGGAGCACTTAATTCACACAACTTTGAGAACCAACTGCTTCTTAAGCTTTTTTAGTTTTGACTGATTTGACCATAGCCAAGATTTCtgcctttttaatatttactactGACCTGCAAAAGACAGCGTCATTGTTTAAAGATGTTCAGTTGTTTAATTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62945 True 4030 lncRNA 0.39 3 4311809 4316111

Neighbor

gene id symbol gene type direction distance location
si:ch211-113j14.1 si:ch211-113j14.1,LOC107706665,LOC107584802,LOC107677609,LOC107659991,LOC107581419,LOC107705485 coding downstream 854 4300020 ~ 4310955 (-)
ccdc14 LOC107706670,LOC107677612,LOC107581416 coding downstream 83879 4221737 ~ 4227930 (-)
LOC122347098 iqcb1,LOC107677558,LOC107706625,LOC107581415,LOC100006122 coding downstream 91075 4215576 ~ 4220734 (-)
tmeff2b tmeff2b,LOC107677530,LOC107706676,LOC107705517,LOC107659984,LOC107581412,LOC107584844 coding downstream 243701 4019688 ~ 4068108 (-)
cavin2b sdprb,LOC107706678,LOC107660017,LOC107705535,LOC107581341,LOC107677589,LOC107584807 coding downstream 298259 4000431 ~ 4013550 (-)
map3k2 map3k2,LOC107660022,LOC107581346,LOC107677576,LOC107584801 coding upstream 195 4316306 ~ 4328147 (-)
LOC122346589 cyp27c1,LOC107706664,LOC107581347,LOC107677575,LOC107705550,LOC107660023 coding upstream 12629 4328740 ~ 4334821 (-)
ercc3 ercc3,LOC107706662,LOC107677608,LOC107705543,LOC107581348,LOC107660024 coding upstream 22908 4339019 ~ 4351472 (-)
wdr12 wdr12,LOC107677607,LOC107706661 coding upstream 35471 4351582 ~ 4356947 (-)
nop58 nop58,LOC107705548,LOC107660025,LOC107706660,LOC107677590 coding upstream 47271 4363382 ~ 4369756 (-)
LOC122346891 NA non-coding downstream 57766 4251834 ~ 4254043 (-)
G42524 NA non-coding downstream 123098 4187700 ~ 4188711 (-)
G42522 NA non-coding downstream 124714 4186364 ~ 4187095 (-)
G42520 LOC107706673,LOC107581344,LOC107705518,LOC107584804,LOC107660123,LOC107677606 non-coding downstream 126691 4184440 ~ 4185118 (-)
G42514 NA non-coding downstream 137917 4172742 ~ 4173892 (-)
G42586 NA non-coding upstream 114447 4430558 ~ 4432327 (-)
G42606 abi2 non-coding upstream 157808 4473919 ~ 4474792 (-)
G42615 NA non-coding upstream 186609 4502720 ~ 4503206 (-)
G42614 NA non-coding upstream 187623 4503734 ~ 4505667 (-)
G42644 LOC101169590,LOC106917580,LOC108430882 non-coding upstream 382792 4698903 ~ 4704503 (-)
G42351 NA other downstream 350267 3958367 ~ 3961542 (-)
cep20 fopnl,LOC107706683,LOC107713084 other downstream 357478 3952528 ~ 3954331 (-)
cep170ab cep170l,LOC107581301,LOC107678228,LOC107672679,LOC107567737,LOC107753897 other downstream 1203871 3092540 ~ 3107938 (-)
G41955 LOC107735028,LOC107705557,LOC108430057 other downstream 1468551 2840662 ~ 2843258 (-)
G41781 NA other downstream 2604401 1702833 ~ 1707408 (-)
cdk15 cdk15,LOC107706659,LOC107677597,LOC107660030 other upstream 78296 4394407 ~ 4415213 (-)
nudt15 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 other upstream 177801 4493912 ~ 4497418 (-)
dnah9l dnah11,LOC107581427,LOC107677540,LOC108430841,LOC108272446,LOC103372266,LOC104955736,LOC107740597,LOC102781332,LOC107384434 other upstream 393179 4709290 ~ 4738542 (-)
gpr155b gpr155b,LOC107740589,LOC107581372,LOC107584777,LOC107705544,LOC107677583,LOC107660045 other upstream 450270 4766381 ~ 4774546 (-)
LOC122347558 cycsb,LOC103040542,LOC108273362,LOC108430847 other upstream 502080 4818191 ~ 4825466 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032612 NA non-coding NC_007117.7 CM002890.2 9532623 ~ 9536491 (-)
mexican tetra (Astyanax mexicanus) G88991 NA non-coding NC_035906.1 CM008309.1 8117875 ~ 8120432 (+)