G41955 (LOC107735028,LOC107705557,LOC108430057)


Basic Information

Item Value
gene id G41955
gene name LOC107735028,LOC107705557,LOC108430057
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 2840662 ~ 2843258 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU62012
GGGATCTGGAAAGAACGCTGTCATATGCAAAGAGCACGTCTCGGCTTTCTGTGACCTACAGACAAAGAGACATCCTGCAGTACCTGAACTGAGAAGCATCTCTGTCCACTCCACCctatatgcttttattaatggTGTCAGAGCAGACGCAATGCGGTGATGACCCACAGTGATAGAAGGTCAATCATTGGGAAGTGGATGCAAATCTCAGCACAATTGGAGTATAGAACCTTCTAGAAactatttgactttttttgaatGGCTAAGGTAGGATATCTGTGTCATAATTATAGGAGAAATGCTAGCaaagattatttgttttaaatctttttatgaaCCTAAATCAGAAAACAAGCAGTAATAGCAAAAGAGActctaataaatacataatctATTAATACTTTTAGTATCAAAAAGTATcagttgaataaataatcatatattcAACTGAATCATTTTAAGTCATCCCCTAATTTAGAACCATTGATATagaatgtaaatatgaataaagaGAAAGCCTTCTTAGTCCTTTTTCTATAACTGCACATGAAGGAATAGTTCTATCTTTTTAAATCACAAGAAATGATTGGTAGAAAAAAGCCTTTAGGGAAAATATTAGGtgatgtctgtgtttctgtaatAAATGCTTCTGAGCAGAACTAAACCAGCACTGACATCAAAAGATGGATGGTTTGTGCTCAGCTGAGCAATGCTTTCCAAATAACTACACGTGATTGGCCCCCGTGGGCTAAACGCAGGTGATCCAGCCACTGACGAGATGCCATCGAAGGTGTCATGCCTGTATTTGCTGACTGTGGTCTGCTGGGCCAGTGCTCTGTGGTATCTCAGTGGCTCTCGGCCCTCAACCACCTACGTAGGTCAGATGACCTTCACCGCCCGCAAACCGCTGCCGAGGATCTCGAAGAACGACACGTTCAGCAATATCCGAACGCGTGCTCTGAACCCCCACAATTTCAAGTTCCTCATCAATGAGCCCAACAAATGTGAAAGCACAACGCCCTTTCTTGTTCTCCTCATAAGCACCAACCACAAGGAGTTCGATGCCCGCCAGGCGATCCGCGAGACGTGGGGAGATGAGAACACGTTCGCGAAGTTCGCATTTTGACTCTGTTCCTTCTTGGGTTCAGCACCGAACCTGTCCTCAACCAGATGGTGGAACAAGAGAGCCAGATCTTCCATGACATCCTAGTCGAGGACTTTGTGGATTCCTACCACAATTTGACCCTGAAGACTCTCATGGGTATGCGATGGGTGTCTACGTTCTGCCCAGCGCAATACATCATGAAAACGGACAGtgatatatttgttaatatggACAATTTAGTGTTTAACCTTCTAAGACCAAACTCCTAAACCAAGGCGACGCTTTTTCACAGGTCATGTGATAAACGGAGGACCCATACGGGACGTTCACAGCAAGTGGTTCATGCCCAGAGAGCTTTACCCCGACAGCAGGTACCCACCTTTTTGCTCTGGCACTGGATACATCTTCTCTGGAGACGTTGCAGAGCTGGTTTATAAGACCTCGCTCCATACTAGACTCCTACATCTGGAGGATGTTTATGTGGGACTATGTCTGCGGAAACTAGGCATTCATCCTTTCCAGAACACTGGATTCAATCATTGGAAAATGACCTACAGTCTCTGCCGCTACCGAAAAGTCTTGACTGTGCATCAGATCTCACCAGAGGAGATACTGAGAATATGGAACGATATGTCCAACAAGAAACACCTCAAATGTTAGTGTTTTCGCTGATGTGTGATAATGAAAATATGGTTATGTATTGGTATtcaaggaacactccactttttttttttaaatgggctTATTCTCCAACTCCCCTACAGTTAATAAGTttagttttaccttttttaaatcCAATCTTCAGGtctggcaatagcacttttagcatagcttagcatagatcattgaatccaattagaccagtagcatatgattaggaactatactctcattccgtTGTAATAACCGAGGATGTGTACTGCGTGTGCTGCGGGCATGATACGGCAGCAAACTTCCCTGATTATTACtccggaatgagagtatagttcctaattaTATCCGCCTAGAAAATTTCTGCtagtcttagtacacaatataactacagaagagtcaagatttaaataggaaaaatactaaaacactgGTCATTTTTGatcgcgatgctactggtctaattggattcagtgATATATTCTAcactatgctaaaagtgctatcgctagacctggagatcggctcaagggattcaaaaatggtaaatttCAACTTATTAACTGaattggagaatgagcctatttcctaaaaaaaaaaaaaaaaaaaaaaatgtttgttaccCTCCAAGTCTGATACAGCAATATACTTGCAACACAGACCACACTCATGAAACCCATTTCAGACTGTAGAGCAATATATGCAGGGTCAAAGTAAATTCACAAGGTATTTGCTATGGTTATGAACTGATGTTTTTGGCCTTACATACTTATAAACATTATTCATATACCAGGCCACTGTGAAATGCTTTATATTAACAATTCCAAcctacaaataaaca

Function

NR:

description
PREDICTED: beta-1,3-galactosyltransferase 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62012 True 2597 TUCP 0.41 1 2840662 2843258

Neighbor

gene id symbol gene type direction distance location
LOC122347520 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 coding downstream 45550 2792631 ~ 2795112 (-)
LOC122347517 itm2ba,LOC107677554,LOC107584788,LOC107660034,LOC107705560,LOC107581357 coding downstream 47927 2786460 ~ 2792735 (-)
LOC122346433 LOC107718079,LOC107589806,LOC107722642 coding downstream 114420 2705533 ~ 2726242 (-)
trak2 LOC107746594,LOC107582328,LOC107686751,LOC107672648 coding downstream 981318 1839000 ~ 1859344 (-)
unc50 unc50,LOC107686789,LOC107746628,LOC107672653 coding downstream 1072562 1765156 ~ 1768100 (-)
rtn4a rtn4a,rtn4,LOC107678208,LOC107753895,LOC107672668,LOC107752117 coding upstream 180127 3023385 ~ 3034793 (-)
mtif2 mtif2,LOC107578070,LOC107581382,LOC107752114 coding upstream 198214 3041472 ~ 3048286 (-)
ccdc88aa ccdc88aa,LOC107752102,LOC107678216,LOC107581383 coding upstream 205656 3048914 ~ 3068202 (-)
pld5 si:ch211-194e18.2,LOC107678171,LOC107752113,LOC107567729,LOC107581384,LOC107753911,LOC107672683 coding upstream 226444 3069702 ~ 3090490 (-)
si:dkey-261j15.2 LOC107678225,LOC107752101,LOC107581302 coding upstream 343309 3186567 ~ 3188418 (-)
G41948 NA non-coding downstream 11954 2828245 ~ 2828708 (-)
G41939 NA non-coding downstream 21071 2818031 ~ 2819591 (-)
G41921 NA non-coding downstream 67299 2771288 ~ 2773363 (-)
G41905 NA non-coding downstream 278021 2562429 ~ 2562641 (-)
LOC122346779 NA non-coding downstream 811752 1942428 ~ 2028910 (-)
G41961 NA non-coding upstream 10781 2854039 ~ 2856147 (-)
G42044 NA non-coding upstream 191935 3035193 ~ 3035582 (-)
G42042 NA non-coding upstream 196265 3039523 ~ 3041038 (-)
LOC122346399 NA non-coding upstream 341973 3185231 ~ 3186557 (-)
G42080 NA non-coding upstream 445633 3288891 ~ 3289983 (-)
G41781 NA other downstream 1133254 1702833 ~ 1707408 (-)
G41443 NA other downstream 2427109 225710 ~ 413553 (-)
LOC122346746 plxna1b,plxna1,LOC107582336,LOC102795829 other downstream 2446318 389416 ~ 394344 (-)
LOC122346743 dlgap1a,dlgap1,LOC107686064,LOC107550721,LOC107584464,LOC107752864,LOC107690825,LOC107554879,LOC107582307,LOC107705865 other downstream 2661529 158596 ~ 179133 (-)
cep170ab cep170l,LOC107581301,LOC107678228,LOC107672679,LOC107567737,LOC107753897 other upstream 249282 3092540 ~ 3107938 (-)
cep20 fopnl,LOC107706683,LOC107713084 other upstream 1109270 3952528 ~ 3954331 (-)
G42351 NA other upstream 1115109 3958367 ~ 3961542 (-)
cdk15 cdk15,LOC107706659,LOC107677597,LOC107660030 other upstream 1551149 4394407 ~ 4415213 (-)
nudt15 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 other upstream 1650654 4493912 ~ 4497418 (-)

Expression


Co-expression Network