RNA id: TU62012


Basic Information

Item Value
RNA id TU62012
length 2597
RNA type TUCP
GC content 0.41
exon number 1
gene id G41955
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 2840662 ~ 2843258 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGATCTGGAAAGAACGCTGTCATATGCAAAGAGCACGTCTCGGCTTTCTGTGACCTACAGACAAAGAGACATCCTGCAGTACCTGAACTGAGAAGCATCTCTGTCCACTCCACCctatatgcttttattaatggTGTCAGAGCAGACGCAATGCGGTGATGACCCACAGTGATAGAAGGTCAATCATTGGGAAGTGGATGCAAATCTCAGCACAATTGGAGTATAGAACCTTCTAGAAactatttgactttttttgaatGGCTAAGGTAGGATATCTGTGTCATAATTATAGGAGAAATGCTAGCaaagattatttgttttaaatctttttatgaaCCTAAATCAGAAAACAAGCAGTAATAGCAAAAGAGActctaataaatacataatctATTAATACTTTTAGTATCAAAAAGTATcagttgaataaataatcatatattcAACTGAATCATTTTAAGTCATCCCCTAATTTAGAACCATTGATATagaatgtaaatatgaataaagaGAAAGCCTTCTTAGTCCTTTTTCTATAACTGCACATGAAGGAATAGTTCTATCTTTTTAAATCACAAGAAATGATTGGTAGAAAAAAGCCTTTAGGGAAAATATTAGGtgatgtctgtgtttctgtaatAAATGCTTCTGAGCAGAACTAAACCAGCACTGACATCAAAAGATGGATGGTTTGTGCTCAGCTGAGCAATGCTTTCCAAATAACTACACGTGATTGGCCCCCGTGGGCTAAACGCAGGTGATCCAGCCACTGACGAGATGCCATCGAAGGTGTCATGCCTGTATTTGCTGACTGTGGTCTGCTGGGCCAGTGCTCTGTGGTATCTCAGTGGCTCTCGGCCCTCAACCACCTACGTAGGTCAGATGACCTTCACCGCCCGCAAACCGCTGCCGAGGATCTCGAAGAACGACACGTTCAGCAATATCCGAACGCGTGCTCTGAACCCCCACAATTTCAAGTTCCTCATCAATGAGCCCAACAAATGTGAAAGCACAACGCCCTTTCTTGTTCTCCTCATAAGCACCAACCACAAGGAGTTCGATGCCCGCCAGGCGATCCGCGAGACGTGGGGAGATGAGAACACGTTCGCGAAGTTCGCATTTTGACTCTGTTCCTTCTTGGGTTCAGCACCGAACCTGTCCTCAACCAGATGGTGGAACAAGAGAGCCAGATCTTCCATGACATCCTAGTCGAGGACTTTGTGGATTCCTACCACAATTTGACCCTGAAGACTCTCATGGGTATGCGATGGGTGTCTACGTTCTGCCCAGCGCAATACATCATGAAAACGGACAGtgatatatttgttaatatggACAATTTAGTGTTTAACCTTCTAAGACCAAACTCCTAAACCAAGGCGACGCTTTTTCACAGGTCATGTGATAAACGGAGGACCCATACGGGACGTTCACAGCAAGTGGTTCATGCCCAGAGAGCTTTACCCCGACAGCAGGTACCCACCTTTTTGCTCTGGCACTGGATACATCTTCTCTGGAGACGTTGCAGAGCTGGTTTATAAGACCTCGCTCCATACTAGACTCCTACATCTGGAGGATGTTTATGTGGGACTATGTCTGCGGAAACTAGGCATTCATCCTTTCCAGAACACTGGATTCAATCATTGGAAAATGACCTACAGTCTCTGCCGCTACCGAAAAGTCTTGACTGTGCATCAGATCTCACCAGAGGAGATACTGAGAATATGGAACGATATGTCCAACAAGAAACACCTCAAATGTTAGTGTTTTCGCTGATGTGTGATAATGAAAATATGGTTATGTATTGGTATtcaaggaacactccactttttttttttaaatgggctTATTCTCCAACTCCCCTACAGTTAATAAGTttagttttaccttttttaaatcCAATCTTCAGGtctggcaatagcacttttagcatagcttagcatagatcattgaatccaattagaccagtagcatatgattaggaactatactctcattccgtTGTAATAACCGAGGATGTGTACTGCGTGTGCTGCGGGCATGATACGGCAGCAAACTTCCCTGATTATTACtccggaatgagagtatagttcctaattaTATCCGCCTAGAAAATTTCTGCtagtcttagtacacaatataactacagaagagtcaagatttaaataggaaaaatactaaaacactgGTCATTTTTGatcgcgatgctactggtctaattggattcagtgATATATTCTAcactatgctaaaagtgctatcgctagacctggagatcggctcaagggattcaaaaatggtaaatttCAACTTATTAACTGaattggagaatgagcctatttcctaaaaaaaaaaaaaaaaaaaaaaatgtttgttaccCTCCAAGTCTGATACAGCAATATACTTGCAACACAGACCACACTCATGAAACCCATTTCAGACTGTAGAGCAATATATGCAGGGTCAAAGTAAATTCACAAGGTATTTGCTATGGTTATGAACTGATGTTTTTGGCCTTACATACTTATAAACATTATTCATATACCAGGCCACTGTGAAATGCTTTATATTAACAATTCCAAcctacaaataaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62005 lncRNA downstream 11954 2828245 ~ 2828708 (-) True G41948
TU61995 lncRNA downstream 21071 2818031 ~ 2819591 (-) True G41939
TU61977 lncRNA downstream 67299 2771288 ~ 2773363 (-) True G41921
TU61948 lncRNA downstream 278021 2562429 ~ 2562641 (-) True G41905
XR_006251168.1 lncRNA downstream 811752 1942428 ~ 2028910 (-) False LOC122346779
TU62020 lncRNA upstream 10781 2854039 ~ 2856147 (-) True G41961
TU62127 lncRNA upstream 191935 3035193 ~ 3035582 (-) True G42044
TU62124 lncRNA upstream 196265 3039523 ~ 3041038 (-) True G42042
TU62122 lncRNA upstream 197087 3040345 ~ 3041038 (-) False G42042
XR_006251127.1 lncRNA upstream 341973 3185231 ~ 3186557 (-) True LOC122346399
XM_043242880.1 mRNA downstream 45550 2792631 ~ 2795112 (-) True LOC122347520
XM_043242875.1 mRNA downstream 47927 2786460 ~ 2792735 (-) True LOC122347517
XM_043241045.1 mRNA downstream 114420 2705533 ~ 2726242 (-) True LOC122346433
XM_043241497.1 mRNA downstream 981318 1839000 ~ 1859344 (-) True trak2
XM_043241061.1 mRNA downstream 1072562 1765156 ~ 1768100 (-) True unc50
XM_043241691.1 mRNA upstream 180127 3023385 ~ 3034793 (-) True rtn4a
XM_043241692.1 mRNA upstream 180127 3023385 ~ 3032573 (-) False rtn4a
XM_043241693.1 mRNA upstream 180127 3023385 ~ 3031019 (-) False rtn4a
XM_043242558.1 mRNA upstream 198214 3041472 ~ 3048286 (-) True mtif2
XM_043242559.1 mRNA upstream 198214 3041472 ~ 3046396 (-) False mtif2
TU61792 other downstream 1133254 1702833 ~ 1707408 (-) True G41781
TU61311 other downstream 2427109 225710 ~ 413553 (-) True G41443
TU61336 other downstream 2665467 173968 ~ 175195 (-) False LOC122346743
TU61334 other downstream 2676605 163323 ~ 164057 (-) False LOC122346743
XR_006251230.1 other upstream 249282 3092540 ~ 3107897 (-) False cep170ab
XR_006251231.1 other upstream 251532 3094790 ~ 3107897 (-) False cep170ab
XR_006251245.1 other upstream 801008 3644266 ~ 3644404 (-) True LOC122347626
TU62651 other upstream 1109290 3952548 ~ 3954278 (-) False cep20
TU62650 other upstream 1115109 3958367 ~ 3961542 (-) True G42351

Expression Profile