LOC122346743 (dlgap1a,dlgap1,LOC107686064,LOC107550721,LOC107584464,LOC107752864,LOC107690825,LOC107554879,LOC107582307,LOC107705865)


Basic Information

Item Value
gene id LOC122346743
gene name dlgap1a,dlgap1,LOC107686064,LOC107550721,LOC107584464,LOC107752864,LOC107690825,LOC107554879,LOC107582307,LOC107705865
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 158596 ~ 179133 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU61334
ACAGTATCATCATGTATCACCACCTACAAGAAGACTCCTCCACCTGTACCTCCTCGCACCTCCACCAAGCCCTTCATCTCCATCACGGCCCAGAGCAGCACAGAATCCGCGCAGGACGCTTACATGGACGGTCCGGGGACGCGGGGGGAACCCGTCCTCCACTCTGGCCTGAGCAATTCCACCGAGAGCATCGATAGCATGAAAGCGCTGACGGCAGCCATCGAGGCGGCCAACGCTCAGATCCACGGCCCTGCCAGTCAACACGTCAGCAACAGCACCATCACCATCAGCACCACCCCTCCCTCTCCGCTGNCCATGCCCATGCCCATGCCCATGCCCGTCCCTGTCCCCATACCCATCCCTGCCCTGGAAGACGTCCGCAGGGATGTGCTCAGGAAGAGCAGGTGCCTTTCTATCGGCATCCAGGTGGATGGGCCTGAGGACCAGGAGC
>TU61336
CTTTCCTGTCCTCAGCTGTCTTCCTTCTCTGCGAGAGTTCTCTGGGAATCGCAGCCTGGATAACCTGGACTGCATCGGAGGCAGTTCTCCGTTCCCAAACTGGGACGATGATGACTTCAGTCAGGGCTGCAGCACGCTGGGACGAGGCAGCTGCATCAGTCAGGTGCGAGACATGGAGTTGAGCCAGCATTACGGAGACGAGCTGGACGACATGCATCTTCACTCGCGCTGCAGCGAGCCTCCCGACATGCCCATGCCCACGTGCTTCCGCTCACGCAGCCATAGTTACCTTCGTGCCATCCAGGCCGGCTGTTCTCAAGACGACGACACGGCCTCCATGGATTCTGATTCCCCGCCTCCCACGACCACCACCACCGTCCGCACCTACAGCAACAGCACCG
>XM_043241595.1
GCTTGTGTGGCTCAGACCGGCAGTCGCTCCGGCACGCTCACGTCCTCTATGTCCATGGGCATGGGTTTGGGTCTGGGGCTGGGCGCTCCCGCCATGATCAGCAGCGGCACGGCCACCATCTCATCCGCGGCCGCCGCCAAGATGAACCGGCTCCCGGCCAACCTGCTGGACCAGTTGGAGCGCCACCTCCCGCTGCAGCGCGACGGCTTCAGCACACTGCAGTTCCACCGGCGCAGCCGCGGCTCCAAGCAGCGCAGCGAGAGTCCCAGCCGCATCCGCAACCTGGTGCAGTCCGTCCAGAAGCTCTTCGCCAAGTCTCAGTCCCTAGAGGTGTCGGCGGTCAAAGGGAGCATCACCGCCGGGCCGGCCGGAGACGCGGCTAAAGCGGCCCGCCGCAGCAAAAGCAAAGACCGGGCGAAGACCGAAGGCACCAAGCGCCGGCCGCGGCCCAACCTCTCAGGCTTCTGGAGCTCGGATGACGGTTTGGAGGACGAGGCTCCGGCTCAGCCCGCCGCCGGGCCCCTGGCGGTGGCGTATCGGAACCCTCTCAGCATGATGACGCTGGGAAGGGCCGTGTCGGACAGTCAGGCGGCTCCCAGACCGCATCCGCAGGGATACAACACCATAGCGGCGCATTCGCTCAAATCCTCCAAGAGCAGCGGAGACCTCAAGCCCACCGTGAGCCTGCCGCCCTCCACGGGCCAGACGGGGGAGACCGCGCTGGTCAAGAGGGGCTCGTGGTCCACGCTGACTCTGAGTCAGGCCCGACAGGTGCTGCAGAAGGGCTCCGCCACCGTCAACCGCACCCTGCTGAAGTCCAAGTCCTGCCACGGCCAGGAGATGACCTGCAACTTCCTACAGGTGCCTGGAGGTGAGTGGAGCGGGACGCTGGGTAAAGGAGGCGGTGCGGGCGAGATCCCCTGCAGACGAATGCGCAGCGGCAGTTACGTCAAAGCCATGGGGGACATGGAGGACAGCGACGACTCGGACGGACCCCCATCACCCAAACCCTCGCCCAAAACCGCTGCCAGGCGCCAGAGTTACCTGAAGGCCACGCAGCACTCGCTCAGCGAACAACAGCCTCCACTGCTACCGCCTCGCAAGTGCACCTCCCTCTTTCTGCCCGTCTCACCTGTAACCCTGCCTCTCTCCAGCCGTCTGCTGGACTACTCGATGCTGCAGGGGGACCTGGAGGCTCTCTGGTCCCCCCTCCACAGCATCAGCACCCTGCAGCAGATCGGACGCTCTGTCAGCTGTCTTCCTTCTCTGCGAGAGTTCTCTGGGAATCGCAGCCTGGATAACCTGGACTGCATCGGAGGCAGTTCTCCGTTCCCAAACTGGGACGATGATGACTTCAGTCAGGGCTGCAGCACGCTGGGACGAGGCAGCTGCATCAGTCAGGTGCGAGACATGGAGTTGAGCCAGCATTACGGAGACGAGCTGGACGACATGCATCTTCACTCGCGCTGCAGCGAGCCTCCCGACATGCCCATGCCCACGTGCTTCCGCTCACGCAGCCATAGTTACCTTCGTGCCATCCAGGCCGGCTGTTCTCAAGACGACGACACGGCCTCCATGGATTCTGATTCCCCGCCTCCCACGACCACCACCACCGTCCGCACCTACAGCAACAGCACCGTATCATCATGTATCACCACCTACAAGAAGACTCCTCCACCTGTACCTCCTCGCACCTCCACCAAGCCCTTCATCTCCATCACGGCCCAGAGCAGCACAGAATCCGCGCAGGACGCTTACATGGACGGTCCGGGGACGCGGGGGGAACCCGTCCTCCACTCTGGCCTGAGCAATTCCACCGAGAGCATCGATAGCATGAAAGCGCTGACGGCAGCCATCGAGGCGGCCAACGCTCAGATCCACGGCCCTGCCAGTCAACACGTCAGCAACAGCACCATCACCATCAGCACCACCCCTCCCTCTCCGCTGNCCATGCCCATGCCCATGCCCATGCCCGTCCCTGTCCCCATACCCATCCCTGCCCTGGAAGACGTCCGCAGGGATGTGCTCAGGAAGAGCAGGTGCCTTTCTATCGGCATCCAGGTGGATGGGCCTGAGGACCAGGAGCNtaatccTTCTTTTGTTCTTGGGTTCAGTCACCGGCGGTTCAAGCGTTCGAACAGCGTGACGACAGCGGTGCAGGCTGATCTGGACACTCCGGACTACACACCAGCCGACTCTCCTGTCACAGATTTCCCCTCCTCGGGCTGCTTGTCACGGCAGTACTCACGTGATGCCGCCACCTCCACCGTCAGCATCCAGGGCTCAGGGAATCACTACCACGCCTGCACCTCAGATGACTACGAGGATGTCGGCTTCGATCCCTCCATCCTTCCTCCACCTGACCCTTGGATCGATAGCGTAACGGAAGATCCCCTGGAAGTCGTGGGCCGCTCGGTGTGTCAGCGTGACGGCCGCTGGTTCCTGAAGCTGCTGCAGGCGGAGACTGAACGCATGGAGGGCTGGTGCAGGCAGATGGAGCACGACGAGAAGGAGAACAAGCTACCTGATGACGTCCTGGGGAAGATCCGCAGTGCGGTGGGAAGCGCACAGCTGCTCATGTCCCAGAAGTTTCAGCAGTTCAGGGAACTGTGTGAGGAAAATCTTAACCCAAACGCTCACCCACGGCCAGTGGCTCAAGATCTCGCAGGTTTCTGGGACATGCTTCAGCTTTCCATCGAGAATATCAGCTTAAAGTTCGATGAGCTTCACCAGCTCAAAGCCAACAACTGGAGACCCCTCGACCCCCCTGAGAGAAAGGAGAGAAGGCTGCCTCCCCCAGTGCCAAAGAAACCCCCGAAAGGCCACCCTCCCCTGGCCAGAGATCGCTCGTTGGAAAGCACTGAGAAGCAGCGGCAGGAGGCGCGCAAGCGTTTGATGGCGGCCAAACGAGCCGCTTCGGTACGGCAGAACTCGGCCACAGAGAGCGCAGACAGCATCGAGATCTATATACCTGAGGCCCAGACCAGATTATGAAACTGCCAAaacgcactctcacacacacacgaacgcCCAAGTGCAGAAATCCGCCGTGAGCACAACACGTCACACAGATCTACATTTGCCTAATGATAAGATCACTGTATATTAGGAGCGACATACACCAGCACCATGAGAGCACAGTAGTAGGAATTTGACCTTTCATTACTAAAACAAAGGACATCCGAGATAGATCTACATCATATTTCTATGACACTAAGACTTCAGGACAAATCACTTGTTTAATTTTACACAAATGAAAACGaggctgttgttgtttttttttgtctctt

Function

symbol description
dlgap1a Predicted to enable molecular adaptor activity. Predicted to be involved in regulation of postsynaptic neurotransmitter receptor activity. Predicted to act upstream of or within chemical synaptic transmission. Predicted to be located in plasma membrane and postsynaptic density. Predicted to be active in glutamatergic synapse and postsynaptic specialization. Is expressed in central nervous system; olfactory bulb; and olfactory placode. Orthologous to human DLGAP1 (DLG associated protein 1).
dlgap1 Predicted to enable molecular adaptor activity. Predicted to be a structural constituent of postsynaptic density. Predicted to be involved in several processes, including aggresome assembly; regulation of postsynaptic neurotransmitter receptor activity; and regulation of proteasomal protein catabolic process. Predicted to be located in plasma membrane. Predicted to be part of postsynaptic density. Predicted to be active in glutamatergic synapse and postsynaptic density, intracellular component.

NR:

description
PREDICTED: disks large-associated protein 1-like

GO:

id name namespace
GO:0044464 obsolete cell part cellular_component
GO:0045202 synapse cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61334 False 451 TUCP 0.61 2 163323 164057
TU61336 False 401 TUCP 0.60 2 173968 175195
XM_043241595.1 True 3290 mRNA 0.60 11 158596 179133

Neighbor

gene id symbol gene type direction distance location
LOC122347266 vdra,LOC107565314,LOC107702164,LOC107701250,LOC103045919 coding downstream 107687 14369 ~ 50909 (-)
lmnl3 LOC107570199,LOC107702161 coding downstream 152832 7 ~ 5764 (-)
LOC122347555 plxna1b,plxna1,LOC107752862,LOC107705867,LOC107582336,LOC107666668 coding upstream 33131 212264 ~ 219260 (-)
LOC122346744 NA coding upstream 46553 225686 ~ 228558 (-)
plxna1b plxna1b,plxna1,LOC107582336 coding upstream 80922 260055 ~ 369102 (-)
chchd6b LOC107666715,LOC107752855,LOC107582306 coding upstream 220109 399242 ~ 413744 (-)
tpra1 tpra1,LOC107666698,LOC107690818 coding upstream 235762 414895 ~ 426693 (-)
G41455 NA non-coding downstream 79155 77927 ~ 79441 (-)
LOC122347556 NA non-coding upstream 28921 208054 ~ 211047 (-)
G41478 NA non-coding upstream 334669 513802 ~ 567804 (-)
G41490 NA non-coding upstream 432839 611972 ~ 613737 (-)
G41530 pbx1,LOC107383950 non-coding upstream 598282 777415 ~ 833159 (-)
G41563 szt2,LOC107690821,LOC107582345,LOC107718365 non-coding upstream 727915 907048 ~ 908023 (-)
G41443 NA other upstream 46577 225710 ~ 413553 (-)
LOC122346746 plxna1b,plxna1,LOC107582336,LOC102795829 other upstream 210283 389416 ~ 394344 (-)
G41781 NA other upstream 1523700 1702833 ~ 1707408 (-)
G41955 LOC107735028,LOC107705557,LOC108430057 other upstream 2661529 2840662 ~ 2843258 (-)
cep170ab cep170l,LOC107581301,LOC107678228,LOC107672679,LOC107567737,LOC107753897 other upstream 2913407 3092540 ~ 3107938 (-)

Expression


Co-expression Network