G41563 (szt2,LOC107690821,LOC107582345,LOC107718365)


Basic Information

Item Value
gene id G41563
gene name szt2,LOC107690821,LOC107582345,LOC107718365
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 907048 ~ 908023 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU61489
CAGTATTTCCCAGAAGCTGCGGCGGGTGGTTTTCCCGGTGGGTGTGGTGGACTCGGGCGTGCTGGCTCCAGTGTTCGGGGTGGAGCTGGGCGCTGAGCTCAGGATGATGGGAGACGGGCTGCTCCTGAGCCCATGAGCTCCGCTGGGCCTCCGAACGCTCTCCTTCACCTCCTTACTGTCAGACTGCAGGACGCTCAGGGAGACTacTGCGCTCTCGTCGCGGGCGGCTGCGGGAAGGCAGAAGGTGTCCAGACACAGCGGGTTGGGCAGCACACGCATCTCCATGAGCACGTCACAGAGAGCATGACGTAGAGCGGCCCGGAGCCGGTCGGTCAGCTGCAGCGGGCTGATGTTACCCTGCTCCCACACGTCGAAGCGCACGCACACAGCTGCACCTGCACAGAGACGGCCcagagctcacacacacacaca

Function

symbol description
szt2 Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 18. Orthologous to human SZT2 (SZT2 subunit of KICSTOR complex).

NR:

description
PREDICTED: protein SZT2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61489 True 432 lncRNA 0.64 2 907048 908023

Neighbor

gene id symbol gene type direction distance location
med8 med8,LOC107708572,LOC107554872,LOC107690829 coding downstream 49574 855707 ~ 857474 (-)
prkag1 prkag1,LOC107582314,LOC107686771,LOC107554882,LOC107752861,LOC107708574 coding downstream 198924 701734 ~ 708124 (-)
pxmp4 pxmp4,LOC103464829 coding downstream 224124 679806 ~ 682924 (-)
LOC122347422 LOC107690823,LOC107554861 coding downstream 229105 670741 ~ 677943 (-)
LOC122346747 LOC107554861 coding downstream 241694 659417 ~ 665354 (-)
hyi hyi coding upstream 32267 940290 ~ 946313 (-)
lrrc41 lrrc41,LOC107746605,LOC107722283 coding upstream 628427 1536450 ~ 1542166 (-)
LOC122346936 uqcrh,LOC107672656,LOC106613551 coding upstream 634283 1542306 ~ 1544027 (-)
dmbx1b dmbx1,dmbx1b,LOC107672661,LOC107554873,LOC107746634 coding upstream 652804 1560827 ~ 1566465 (-)
tlk1b tlk1b,LOC107557139,LOC107746598,LOC107709077,LOC107686756 coding upstream 808706 1716729 ~ 1731431 (-)
G41530 pbx1,LOC107383950 non-coding downstream 73889 777415 ~ 833159 (-)
G41490 NA non-coding downstream 293311 611972 ~ 613737 (-)
G41478 NA non-coding downstream 339244 513802 ~ 567804 (-)
LOC122347556 NA non-coding downstream 696001 208054 ~ 211047 (-)
G41455 NA non-coding downstream 827607 77927 ~ 79441 (-)
G41580 NA non-coding upstream 116979 1025002 ~ 1025752 (-)
G41582 NA non-coding upstream 174736 1082759 ~ 1083148 (-)
G41583 NA non-coding upstream 175775 1083798 ~ 1084177 (-)
G41587 NA non-coding upstream 196976 1104999 ~ 1105533 (-)
G41615 NA non-coding upstream 517545 1425568 ~ 1431934 (-)
G41443 NA other downstream 493495 225710 ~ 413553 (-)
LOC122346746 plxna1b,plxna1,LOC107582336,LOC102795829 other downstream 512704 389416 ~ 394344 (-)
LOC122346743 dlgap1a,dlgap1,LOC107686064,LOC107550721,LOC107584464,LOC107752864,LOC107690825,LOC107554879,LOC107582307,LOC107705865 other downstream 727915 158596 ~ 179133 (-)
G41781 NA other upstream 794810 1702833 ~ 1707408 (-)
G41955 LOC107735028,LOC107705557,LOC108430057 other upstream 1932639 2840662 ~ 2843258 (-)
cep170ab cep170l,LOC107581301,LOC107678228,LOC107672679,LOC107567737,LOC107753897 other upstream 2184517 3092540 ~ 3107938 (-)
cep20 fopnl,LOC107706683,LOC107713084 other upstream 3044505 3952528 ~ 3954331 (-)
G42351 NA other upstream 3050344 3958367 ~ 3961542 (-)

Expression


Co-expression Network