LOC122347266 (vdra,LOC107565314,LOC107702164,LOC107701250,LOC103045919)


Basic Information

Item Value
gene id LOC122347266
gene name vdra,LOC107565314,LOC107702164,LOC107701250,LOC103045919
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14369 ~ 50909 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242451.1
CTGCCGTCCGCTCGCCTGCTTGGTTTATCTGGAgaacgaagaagaagaagaagaagaagaagaagcagaagaagCGTTCCGTTGGGACTAAACGCGAGTTAAACTGCGGCCTGGGAACGGATTCAGTGGATGGTTACGGAAACAAGTCCAAAAAACTCAGgtcTCAGATGTGAGTGTGAAGCTGGCGCGTGTGAATCCAGAGTAAACAGTGATGCCACATCAGTGATGGACCCTATGGCCGTGAGCACGTCCGCGACGGGTCAGGATGAGTTTGACCGCAACGCGCCGCGGATCTGTGGGGTGTGTGGAGACAAGGCCACCGGCTTCCACTTCAACGCCATGACCTGCGAGGGATGCAAGGGCTTCTTCAGGCGCAGTATGAAGCGCAAGGCGAGCTTCACCTGCCCCTTCAACGGGAACTGCACCATCACCAAAGATAACCGGCGCCACTGCCAGGCCTGCCGTCTGAAGCGCTGCGTCGACATCGGCATGATGAAGGAGTtcaTTCTGACAGACGAGGAGGTGCAGAGGAAGAAGGAGCTGATCCTGaagaggaaggaggaggaggcggcGCGGGAGGCTCGTAAACCTCGTCTGAGCGACGAACAGATGCAGATCATCAACACGCTGGTGGAGGCGCACCACAAGACCTACGACGACTCGTACTCCGACTTCGTCCGCTTCAGGCCTCCGGTCCGTGAGGGACCAGTCACCCGCAGCGCCAGCCGGGCCGCCTCTCTACACTCACTGTCTGACGCCTCGTCTGATTCATTCAACCATTCCccagaaTCTGTGGACACTAAGCTGAACTTCAGTAATCTGCTGATGATGTATCAGGACAGCGGCGGCAGCCCGGACTCCAGCGAGGAGGATAACTCCCGTCTGTCCATGTTACCTCACCTGGCCGACCTCGTCAGCTACAGCATCCAGAAAGTCATCGGCTTCGCCAAGATGATCCCCGGCTTCAGggaCCTGACAGCAGAAGATCAGATCGCTCTGCTGAAGTCCAGCGCTATTGAGATCATCATGCTGCGCTCCAATCAGTCCTTCAGTCTGGAGGACATGAGCTGGAGCTGTGGAGGACCGGACTTCAAGTACTGCGTCAACGACGTCACCAaggcgggTCACACTCTGGAGCTGCTGGAGCCGCTGGTGAAGTTTCAGGTGGGTCTGAAGAAGCTGAACATGCATGAAGAGGAACATGTGCTGCTGATGGCCATCTGCCTGCTGtctccagACCGGCCGGGCGTCCAGGACCACGCTCGAATCGAGGAGCTGCAGGACCGCCTGTGTGACGTCCTGCAGGCCTACATCCGGATCCATCACCCCGGCGGCCGTCTGCTGTACGCCAAGATGATCCAGAAGCTGGCGGACCTGCGCAGCCTGAACGAGGAGCACTCCAAGCAGTACCGCTCGCTGTCCTTCCAGCCCGAGCACAGCATGCAGCTGACGCCGCTGGTGCTGGAGGTGTTCGGCAGCGAGGTGTCCTAGCGTCCCAGAGCCCCCCGGCCGCTCGCGGGGCACGGCTCTAAGCTACGGGGAGTTCCCCAGAGgaatgtattaataatgtatgGATAGAACGATGCatataaactaatatttatatttaagagagagagagagagagagagagagagatagagatagaagTGGTTTGTATTAAATGAAAACGTATGGCCAGGTGATCCTCTGTTGTAATAGGATTAGCAGGCTCTTCTAGTTCATGTGCatagatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagacgtgCACAA
>XM_043242452.1
CCTGCTTGGTTTATCTGGAgaacgaagaagaagaagaagaagaagaagaagcagaagaagCGTTCCGTTGGGACTAAACGCGAGTTAAACTGCGGCCTGGGAACGGATTCAGTGGATGGTTACGGAAACAAGTCCAAAAAACTCAGTGATGGACCCTATGGCCGTGAGCACGTCCGCGACGGGTCAGGATGAGTTTGACCGCAACGCGCCGCGGATCTGTGGGGTGTGTGGAGACAAGGCCACCGGCTTCCACTTCAACGCCATGACCTGCGAGGGATGCAAGGGCTTCTTCAGGCGCAGTATGAAGCGCAAGGCGAGCTTCACCTGCCCCTTCAACGGGAACTGCACCATCACCAAAGATAACCGGCGCCACTGCCAGGCCTGCCGTCTGAAGCGCTGCGTCGACATCGGCATGATGAAGGAGTtcaTTCTGACAGACGAGGAGGTGCAGAGGAAGAAGGAGCTGATCCTGaagaggaaggaggaggaggcggcGCGGGAGGCTCGTAAACCTCGTCTGAGCGACGAACAGATGCAGATCATCAACACGCTGGTGGAGGCGCACCACAAGACCTACGACGACTCGTACTCCGACTTCGTCCGCTTCAGGCCTCCGGTCCGTGAGGGACCAGTCACCCGCAGCGCCAGCCGGGCCGCCTCTCTACACTCACTGTCTGACGCCTCGTCTGATTCATTCAACCATTCCccagaaTCTGTGGACACTAAGCTGAACTTCAGTAATCTGCTGATGATGTATCAGGACAGCGGCGGCAGCCCGGACTCCAGCGAGGAGGATAACTCCCGTCTGTCCATGTTACCTCACCTGGCCGACCTCGTCAGCTACAGCATCCAGAAAGTCATCGGCTTCGCCAAGATGATCCCCGGCTTCAGggaCCTGACAGCAGAAGATCAGATCGCTCTGCTGAAGTCCAGCGCTATTGAGATCATCATGCTGCGCTCCAATCAGTCCTTCAGTCTGGAGGACATGAGCTGGAGCTGTGGAGGACCGGACTTCAAGTACTGCGTCAACGACGTCACCAaggcgggTCACACTCTGGAGCTGCTGGAGCCGCTGGTGAAGTTTCAGGTGGGTCTGAAGAAGCTGAACATGCATGAAGAGGAACATGTGCTGCTGATGGCCATCTGCCTGCTGtctccagACCGGCCGGGCGTCCAGGACCACGCTCGAATCGAGGAGCTGCAGGACCGCCTGTGTGACGTCCTGCAGGCCTACATCCGGATCCATCACCCCGGCGGCCGTCTGCTGTACGCCAAGATGATCCAGAAGCTGGCGGACCTGCGCAGCCTGAACGAGGAGCACTCCAAGCAGTACCGCTCGCTGTCCTTCCAGCCCGAGCACAGCATGCAGCTGACGCCGCTGGTGCTGGAGGTGTTCGGCAGCGAGGTGTCCTAGCGTCCCAGAGCCCCCCGGCCGCTCGCGGGGCACGGCTCTAAGCTACGGGGAGTTCCCCAGAGgaatgtattaataatgtatgGATAGAACGATGCatataaactaatatttatatttaagagagagagagagagagagagagagagatagagatagaagTGGTTTGTATTAAATGAAAACGTATGGCCAGGTGATCCTCTGTTGTAATAGGATTAGCAGGCTCTTCTAGTTCATGTGCatagatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagacgtgCACAA
>XM_043242453.1
CTTCCTCGCGAGCTAAAGCGGGTCTAAAGTTCAGCGTCTCTGACGTTCAGGTCCGGGCCGAGGCCGGCGTTTCGTGTCTTTTTGCGCTCGTTCTTTCGTCGGTGGCTCGCGAGCGGGATTCCAGCGGATCTGATCCGGGATCGGCTGCCTTCGGCTGCTAGCGGCGGACCTCTGCGTTTTCCAGAATGTGATGGACCCTATGGCCGTGAGCACGTCCGCGACGGGTCAGGATGAGTTTGACCGCAACGCGCCGCGGATCTGTGGGGTGTGTGGAGACAAGGCCACCGGCTTCCACTTCAACGCCATGACCTGCGAGGGATGCAAGGGCTTCTTCAGGCGCAGTATGAAGCGCAAGGCGAGCTTCACCTGCCCCTTCAACGGGAACTGCACCATCACCAAAGATAACCGGCGCCACTGCCAGGCCTGCCGTCTGAAGCGCTGCGTCGACATCGGCATGATGAAGGAGTtcaTTCTGACAGACGAGGAGGTGCAGAGGAAGAAGGAGCTGATCCTGaagaggaaggaggaggaggcggcGCGGGAGGCTCGTAAACCTCGTCTGAGCGACGAACAGATGCAGATCATCAACACGCTGGTGGAGGCGCACCACAAGACCTACGACGACTCGTACTCCGACTTCGTCCGCTTCAGGCCTCCGGTCCGTGAGGGACCAGTCACCCGCAGCGCCAGCCGGGCCGCCTCTCTACACTCACTGTCTGACGCCTCGTCTGATTCATTCAACCATTCCccagaaTCTGTGGACACTAAGCTGAACTTCAGTAATCTGCTGATGATGTATCAGGACAGCGGCGGCAGCCCGGACTCCAGCGAGGAGGATAACTCCCGTCTGTCCATGTTACCTCACCTGGCCGACCTCGTCAGCTACAGCATCCAGAAAGTCATCGGCTTCGCCAAGATGATCCCCGGCTTCAGggaCCTGACAGCAGAAGATCAGATCGCTCTGCTGAAGTCCAGCGCTATTGAGATCATCATGCTGCGCTCCAATCAGTCCTTCAGTCTGGAGGACATGAGCTGGAGCTGTGGAGGACCGGACTTCAAGTACTGCGTCAACGACGTCACCAaggcgggTCACACTCTGGAGCTGCTGGAGCCGCTGGTGAAGTTTCAGGTGGGTCTGAAGAAGCTGAACATGCATGAAGAGGAACATGTGCTGCTGATGGCCATCTGCCTGCTGtctccagACCGGCCGGGCGTCCAGGACCACGCTCGAATCGAGGAGCTGCAGGACCGCCTGTGTGACGTCCTGCAGGCCTACATCCGGATCCATCACCCCGGCGGCCGTCTGCTGTACGCCAAGATGATCCAGAAGCTGGCGGACCTGCGCAGCCTGAACGAGGAGCACTCCAAGCAGTACCGCTCGCTGTCCTTCCAGCCCGAGCACAGCATGCAGCTGACGCCGCTGGTGCTGGAGGTGTTCGGCAGCGAGGTGTCCTAGCGTCCCAGAGCCCCCCGGCCGCTCGCGGGGCACGGCTCTAAGCTACGGGGAGTTCCCCAGAGgaatgtattaataatgtatgGATAGAACGATGCatataaactaatatttatatttaagagagagagagagagagagagagagagatagagatagaagTGGTTTGTATTAAATGAAAACGTATGGCCAGGTGATCCTCTGTTGTAATAGGATTAGCAGGCTCTTCTAGTTCATGTGCatagatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagacgtgCACAA

Function

symbol description
vdra Enables calcitriol binding activity; lithocholic acid binding activity; and nuclear receptor activity. Contributes to DNA-binding transcription factor activity and vitamin D response element binding activity. Acts upstream of or within several processes, including embryonic heart tube morphogenesis; hematopoietic stem cell proliferation; and transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including brain; head; heart; integument; and pleuroperitoneal region. Used to study hematopoietic system disease and vitamin D-dependent rickets. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); carcinoma (multiple); lipid storage disease (multiple); melanoma (multiple); and tuberculosis (multiple). Orthologous to human VDR (vitamin D receptor).

NR:

description
PREDICTED: vitamin D3 receptor A isoform X1

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001503 ossification biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0055074 calcium ion homeostasis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0005499 vitamin D binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08539 VDR, NR1I1; vitamin D3 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242451.1 True 1820 mRNA 0.56 10 14369 50909
XM_043242452.1 False 1743 mRNA 0.56 9 14369 50895
XM_043242453.1 False 1785 mRNA 0.57 9 14369 32624

Neighbor

gene id symbol gene type direction distance location
lmnl3 LOC107570199,LOC107702161 coding downstream 8605 7 ~ 5764 (-)
LOC122347555 plxna1b,plxna1,LOC107752862,LOC107705867,LOC107582336,LOC107666668 coding upstream 161355 212264 ~ 219260 (-)
LOC122346744 NA coding upstream 174777 225686 ~ 228558 (-)
plxna1b plxna1b,plxna1,LOC107582336 coding upstream 209146 260055 ~ 369102 (-)
chchd6b LOC107666715,LOC107752855,LOC107582306 coding upstream 348333 399242 ~ 413744 (-)
tpra1 tpra1,LOC107666698,LOC107690818 coding upstream 363986 414895 ~ 426693 (-)
G41455 NA non-coding upstream 27018 77927 ~ 79441 (-)
LOC122347556 NA non-coding upstream 157145 208054 ~ 211047 (-)
G41478 NA non-coding upstream 462893 513802 ~ 567804 (-)
G41490 NA non-coding upstream 561063 611972 ~ 613737 (-)
G41530 pbx1,LOC107383950 non-coding upstream 726506 777415 ~ 833159 (-)
LOC122346743 dlgap1a,dlgap1,LOC107686064,LOC107550721,LOC107584464,LOC107752864,LOC107690825,LOC107554879,LOC107582307,LOC107705865 other upstream 107687 158596 ~ 179133 (-)
G41443 NA other upstream 174801 225710 ~ 413553 (-)
LOC122346746 plxna1b,plxna1,LOC107582336,LOC102795829 other upstream 338507 389416 ~ 394344 (-)
G41781 NA other upstream 1651924 1702833 ~ 1707408 (-)
G41955 LOC107735028,LOC107705557,LOC108430057 other upstream 2789753 2840662 ~ 2843258 (-)

Expression


Co-expression Network