RNA id: XM_043242451.1


Basic Information

Item Value
RNA id XM_043242451.1
length 1820
RNA type mRNA
GC content 0.56
exon number 10
gene id LOC122347266
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14369 ~ 50909 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCCGTCCGCTCGCCTGCTTGGTTTATCTGGAgaacgaagaagaagaagaagaagaagaagaagcagaagaagCGTTCCGTTGGGACTAAACGCGAGTTAAACTGCGGCCTGGGAACGGATTCAGTGGATGGTTACGGAAACAAGTCCAAAAAACTCAGgtcTCAGATGTGAGTGTGAAGCTGGCGCGTGTGAATCCAGAGTAAACAGTGATGCCACATCAGTGATGGACCCTATGGCCGTGAGCACGTCCGCGACGGGTCAGGATGAGTTTGACCGCAACGCGCCGCGGATCTGTGGGGTGTGTGGAGACAAGGCCACCGGCTTCCACTTCAACGCCATGACCTGCGAGGGATGCAAGGGCTTCTTCAGGCGCAGTATGAAGCGCAAGGCGAGCTTCACCTGCCCCTTCAACGGGAACTGCACCATCACCAAAGATAACCGGCGCCACTGCCAGGCCTGCCGTCTGAAGCGCTGCGTCGACATCGGCATGATGAAGGAGTtcaTTCTGACAGACGAGGAGGTGCAGAGGAAGAAGGAGCTGATCCTGaagaggaaggaggaggaggcggcGCGGGAGGCTCGTAAACCTCGTCTGAGCGACGAACAGATGCAGATCATCAACACGCTGGTGGAGGCGCACCACAAGACCTACGACGACTCGTACTCCGACTTCGTCCGCTTCAGGCCTCCGGTCCGTGAGGGACCAGTCACCCGCAGCGCCAGCCGGGCCGCCTCTCTACACTCACTGTCTGACGCCTCGTCTGATTCATTCAACCATTCCccagaaTCTGTGGACACTAAGCTGAACTTCAGTAATCTGCTGATGATGTATCAGGACAGCGGCGGCAGCCCGGACTCCAGCGAGGAGGATAACTCCCGTCTGTCCATGTTACCTCACCTGGCCGACCTCGTCAGCTACAGCATCCAGAAAGTCATCGGCTTCGCCAAGATGATCCCCGGCTTCAGggaCCTGACAGCAGAAGATCAGATCGCTCTGCTGAAGTCCAGCGCTATTGAGATCATCATGCTGCGCTCCAATCAGTCCTTCAGTCTGGAGGACATGAGCTGGAGCTGTGGAGGACCGGACTTCAAGTACTGCGTCAACGACGTCACCAaggcgggTCACACTCTGGAGCTGCTGGAGCCGCTGGTGAAGTTTCAGGTGGGTCTGAAGAAGCTGAACATGCATGAAGAGGAACATGTGCTGCTGATGGCCATCTGCCTGCTGtctccagACCGGCCGGGCGTCCAGGACCACGCTCGAATCGAGGAGCTGCAGGACCGCCTGTGTGACGTCCTGCAGGCCTACATCCGGATCCATCACCCCGGCGGCCGTCTGCTGTACGCCAAGATGATCCAGAAGCTGGCGGACCTGCGCAGCCTGAACGAGGAGCACTCCAAGCAGTACCGCTCGCTGTCCTTCCAGCCCGAGCACAGCATGCAGCTGACGCCGCTGGTGCTGGAGGTGTTCGGCAGCGAGGTGTCCTAGCGTCCCAGAGCCCCCCGGCCGCTCGCGGGGCACGGCTCTAAGCTACGGGGAGTTCCCCAGAGgaatgtattaataatgtatgGATAGAACGATGCatataaactaatatttatatttaagagagagagagagagagagagagagagatagagatagaagTGGTTTGTATTAAATGAAAACGTATGGCCAGGTGATCCTCTGTTGTAATAGGATTAGCAGGCTCTTCTAGTTCATGTGCatagatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagacgtgCACAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001503 ossification biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0055074 calcium ion homeostasis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0005499 vitamin D binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08539 VDR, NR1I1; vitamin D3 receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61325 lncRNA upstream 27018 77927 ~ 79441 (-) True G41455
XR_006251236.1 lncRNA upstream 157145 208054 ~ 211047 (-) True LOC122347556
TU61342 lncRNA upstream 340509 391418 ~ 393192 (-) False LOC122346746
TU61359 lncRNA upstream 462893 513802 ~ 567804 (-) True G41478
TU61383 lncRNA upstream 561063 611972 ~ 613737 (-) True G41490
XM_043241125.1 mRNA downstream 8605 7 ~ 5764 (-) True lmnl3
XM_043241595.1 mRNA upstream 107687 158596 ~ 179133 (-) True LOC122346743
XM_043242921.1 mRNA upstream 161355 212264 ~ 219260 (-) True LOC122347555
XM_043241596.1 mRNA upstream 174777 225686 ~ 228558 (-) True LOC122346744
XM_043241135.1 mRNA upstream 209146 260055 ~ 369102 (-) True plxna1b
XM_043241134.1 mRNA upstream 211312 262221 ~ 369102 (-) False plxna1b
TU61334 other upstream 112414 163323 ~ 164057 (-) False LOC122346743
TU61336 other upstream 123059 173968 ~ 175195 (-) False LOC122346743
TU61311 other upstream 174801 225710 ~ 413553 (-) True G41443
TU61792 other upstream 1651924 1702833 ~ 1707408 (-) True G41781
TU62012 other upstream 2789753 2840662 ~ 2843258 (-) True G41955

Expression Profile