RNA id: XM_043241595.1


Basic Information

Item Value
RNA id XM_043241595.1
length 3290
RNA type mRNA
GC content 0.60
exon number 11
gene id LOC122346743
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 158596 ~ 179133 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTGTGTGGCTCAGACCGGCAGTCGCTCCGGCACGCTCACGTCCTCTATGTCCATGGGCATGGGTTTGGGTCTGGGGCTGGGCGCTCCCGCCATGATCAGCAGCGGCACGGCCACCATCTCATCCGCGGCCGCCGCCAAGATGAACCGGCTCCCGGCCAACCTGCTGGACCAGTTGGAGCGCCACCTCCCGCTGCAGCGCGACGGCTTCAGCACACTGCAGTTCCACCGGCGCAGCCGCGGCTCCAAGCAGCGCAGCGAGAGTCCCAGCCGCATCCGCAACCTGGTGCAGTCCGTCCAGAAGCTCTTCGCCAAGTCTCAGTCCCTAGAGGTGTCGGCGGTCAAAGGGAGCATCACCGCCGGGCCGGCCGGAGACGCGGCTAAAGCGGCCCGCCGCAGCAAAAGCAAAGACCGGGCGAAGACCGAAGGCACCAAGCGCCGGCCGCGGCCCAACCTCTCAGGCTTCTGGAGCTCGGATGACGGTTTGGAGGACGAGGCTCCGGCTCAGCCCGCCGCCGGGCCCCTGGCGGTGGCGTATCGGAACCCTCTCAGCATGATGACGCTGGGAAGGGCCGTGTCGGACAGTCAGGCGGCTCCCAGACCGCATCCGCAGGGATACAACACCATAGCGGCGCATTCGCTCAAATCCTCCAAGAGCAGCGGAGACCTCAAGCCCACCGTGAGCCTGCCGCCCTCCACGGGCCAGACGGGGGAGACCGCGCTGGTCAAGAGGGGCTCGTGGTCCACGCTGACTCTGAGTCAGGCCCGACAGGTGCTGCAGAAGGGCTCCGCCACCGTCAACCGCACCCTGCTGAAGTCCAAGTCCTGCCACGGCCAGGAGATGACCTGCAACTTCCTACAGGTGCCTGGAGGTGAGTGGAGCGGGACGCTGGGTAAAGGAGGCGGTGCGGGCGAGATCCCCTGCAGACGAATGCGCAGCGGCAGTTACGTCAAAGCCATGGGGGACATGGAGGACAGCGACGACTCGGACGGACCCCCATCACCCAAACCCTCGCCCAAAACCGCTGCCAGGCGCCAGAGTTACCTGAAGGCCACGCAGCACTCGCTCAGCGAACAACAGCCTCCACTGCTACCGCCTCGCAAGTGCACCTCCCTCTTTCTGCCCGTCTCACCTGTAACCCTGCCTCTCTCCAGCCGTCTGCTGGACTACTCGATGCTGCAGGGGGACCTGGAGGCTCTCTGGTCCCCCCTCCACAGCATCAGCACCCTGCAGCAGATCGGACGCTCTGTCAGCTGTCTTCCTTCTCTGCGAGAGTTCTCTGGGAATCGCAGCCTGGATAACCTGGACTGCATCGGAGGCAGTTCTCCGTTCCCAAACTGGGACGATGATGACTTCAGTCAGGGCTGCAGCACGCTGGGACGAGGCAGCTGCATCAGTCAGGTGCGAGACATGGAGTTGAGCCAGCATTACGGAGACGAGCTGGACGACATGCATCTTCACTCGCGCTGCAGCGAGCCTCCCGACATGCCCATGCCCACGTGCTTCCGCTCACGCAGCCATAGTTACCTTCGTGCCATCCAGGCCGGCTGTTCTCAAGACGACGACACGGCCTCCATGGATTCTGATTCCCCGCCTCCCACGACCACCACCACCGTCCGCACCTACAGCAACAGCACCGTATCATCATGTATCACCACCTACAAGAAGACTCCTCCACCTGTACCTCCTCGCACCTCCACCAAGCCCTTCATCTCCATCACGGCCCAGAGCAGCACAGAATCCGCGCAGGACGCTTACATGGACGGTCCGGGGACGCGGGGGGAACCCGTCCTCCACTCTGGCCTGAGCAATTCCACCGAGAGCATCGATAGCATGAAAGCGCTGACGGCAGCCATCGAGGCGGCCAACGCTCAGATCCACGGCCCTGCCAGTCAACACGTCAGCAACAGCACCATCACCATCAGCACCACCCCTCCCTCTCCGCTGNCCATGCCCATGCCCATGCCCATGCCCGTCCCTGTCCCCATACCCATCCCTGCCCTGGAAGACGTCCGCAGGGATGTGCTCAGGAAGAGCAGGTGCCTTTCTATCGGCATCCAGGTGGATGGGCCTGAGGACCAGGAGCNtaatccTTCTTTTGTTCTTGGGTTCAGTCACCGGCGGTTCAAGCGTTCGAACAGCGTGACGACAGCGGTGCAGGCTGATCTGGACACTCCGGACTACACACCAGCCGACTCTCCTGTCACAGATTTCCCCTCCTCGGGCTGCTTGTCACGGCAGTACTCACGTGATGCCGCCACCTCCACCGTCAGCATCCAGGGCTCAGGGAATCACTACCACGCCTGCACCTCAGATGACTACGAGGATGTCGGCTTCGATCCCTCCATCCTTCCTCCACCTGACCCTTGGATCGATAGCGTAACGGAAGATCCCCTGGAAGTCGTGGGCCGCTCGGTGTGTCAGCGTGACGGCCGCTGGTTCCTGAAGCTGCTGCAGGCGGAGACTGAACGCATGGAGGGCTGGTGCAGGCAGATGGAGCACGACGAGAAGGAGAACAAGCTACCTGATGACGTCCTGGGGAAGATCCGCAGTGCGGTGGGAAGCGCACAGCTGCTCATGTCCCAGAAGTTTCAGCAGTTCAGGGAACTGTGTGAGGAAAATCTTAACCCAAACGCTCACCCACGGCCAGTGGCTCAAGATCTCGCAGGTTTCTGGGACATGCTTCAGCTTTCCATCGAGAATATCAGCTTAAAGTTCGATGAGCTTCACCAGCTCAAAGCCAACAACTGGAGACCCCTCGACCCCCCTGAGAGAAAGGAGAGAAGGCTGCCTCCCCCAGTGCCAAAGAAACCCCCGAAAGGCCACCCTCCCCTGGCCAGAGATCGCTCGTTGGAAAGCACTGAGAAGCAGCGGCAGGAGGCGCGCAAGCGTTTGATGGCGGCCAAACGAGCCGCTTCGGTACGGCAGAACTCGGCCACAGAGAGCGCAGACAGCATCGAGATCTATATACCTGAGGCCCAGACCAGATTATGAAACTGCCAAaacgcactctcacacacacacgaacgcCCAAGTGCAGAAATCCGCCGTGAGCACAACACGTCACACAGATCTACATTTGCCTAATGATAAGATCACTGTATATTAGGAGCGACATACACCAGCACCATGAGAGCACAGTAGTAGGAATTTGACCTTTCATTACTAAAACAAAGGACATCCGAGATAGATCTACATCATATTTCTATGACACTAAGACTTCAGGACAAATCACTTGTTTAATTTTACACAAATGAAAACGaggctgttgttgtttttttttgtctctt

Function

GO:

id name namespace
GO:0044464 obsolete cell part cellular_component
GO:0045202 synapse cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61325 lncRNA downstream 79155 77927 ~ 79441 (-) True G41455
XR_006251236.1 lncRNA upstream 28921 208054 ~ 211047 (-) True LOC122347556
TU61342 lncRNA upstream 212285 391418 ~ 393192 (-) False LOC122346746
TU61359 lncRNA upstream 334669 513802 ~ 567804 (-) True G41478
TU61383 lncRNA upstream 432839 611972 ~ 613737 (-) True G41490
TU61452 lncRNA upstream 598282 777415 ~ 833159 (-) True G41530
XM_043242451.1 mRNA downstream 107687 14369 ~ 50909 (-) True LOC122347266
XM_043242452.1 mRNA downstream 107701 14369 ~ 50895 (-) False LOC122347266
XM_043242453.1 mRNA downstream 125972 14369 ~ 32624 (-) False LOC122347266
XM_043241125.1 mRNA downstream 152832 7 ~ 5764 (-) True lmnl3
XM_043242921.1 mRNA upstream 33131 212264 ~ 219260 (-) True LOC122347555
XM_043241596.1 mRNA upstream 46553 225686 ~ 228558 (-) True LOC122346744
XM_043241135.1 mRNA upstream 80922 260055 ~ 369102 (-) True plxna1b
XM_043241134.1 mRNA upstream 83088 262221 ~ 369102 (-) False plxna1b
XM_043241597.1 mRNA upstream 210283 389416 ~ 394344 (-) True LOC122346746
TU61311 other upstream 46577 225710 ~ 413553 (-) True G41443
TU61792 other upstream 1523700 1702833 ~ 1707408 (-) True G41781
TU62012 other upstream 2661529 2840662 ~ 2843258 (-) True G41955
XR_006251230.1 other upstream 2913407 3092540 ~ 3107897 (-) False cep170ab
XR_006251231.1 other upstream 2915657 3094790 ~ 3107897 (-) False cep170ab

Expression Profile