RNA id: TU61311



Basic Information


Item Value
RNA id TU61311
length 996
RNA type TUCP
GC content 0.47
exon number 4
gene id G41443
representative True

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 225710 ~ 413553 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CGATAACCGTAATAGCGTGTCTGATGATTTTATCCGCACGCAGCGGGACGCAGTGACCCTGAAGTGAATCGGGGTGATTTTATTTCTCTTGTTGGAGCGTTTGGGGTGATTTGGGGCTGATGGGGGCCGCGGACAGCAGGAGCAGGTCTGTGTCGTACGGACTCGACGAACAGGACAATGTCACGGTTATACACGGAGTAAAGTTGTCCGGAGATGTTCTTCAGCGGATGCGAGAGTCTggaccatcatcatcatcatcatcatcatcactcaAAGCAGAGAGCACCAAACCTGAACCAGGGCCGTCCAGACCGTCCTCCACAGAGACCAGGAGGAGCTCAGAAGACGGTTCGAGCGCGAGCAGGCTCTGGTCCAGGAAGAGTTGGCCCGGATCAGCcgtagagagagagatatcagGAGACGATATAAAGACACGGCAGGAAGTAGACAAAACACACAACCTggtgagacacaaacacacacacacacgtgtaacATGCCTTactttgttattaataatttactttcAAGCAACATCCATATTTGTCTTGCCGGCGAGGCATCGTCTTTCTGATCAAAAACCGGTTTAATTAATGTGTTGTGTTGAAGTCGCACACACACCTATCAGTTCCTGGTAATGCAGCAGTGGTAATAAAAGTTTTGCagcactagatggcagcaggAGTGTTTGACTGAATGTGACGCTCCAGACGGTGCTTTATAACAGCCAGCTTCCATGTTAATCATAATGACCTTGTTTTGCATGTAAAGCTTGTAGTATTCTTGATTGCAGTCTTTTGTTTTGCACTCTCTCGGTTTCTGATTATGATCGATGTGTATTTTCCAGCTCATTTAGACGCACAGATGTGTGTTAATACCCAGTTCTCTGATTAGTGTGAAAGAACAGGAAAGCAGTGTGTGATTGTGCTCCAGTCCTTCAGATGGGCAGAGAGGAGATCTTTCTGTAACGTTTCCTCATCACGGTGTTGTTTCTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006251236.1 lncRNA downstream 14663 208054 ~ 211047 (-) True LOC122347556
TU61325 lncRNA downstream 146269 77927 ~ 79441 (-) True G41455
TU61359 lncRNA upstream 100249 513802 ~ 567804 (-) True G41478
TU61383 lncRNA upstream 198419 611972 ~ 613737 (-) True G41490
TU61452 lncRNA upstream 363862 777415 ~ 833159 (-) True G41530
TU61489 lncRNA upstream 493495 907048 ~ 908023 (-) True G41563
TU61514 lncRNA upstream 611449 1025002 ~ 1025752 (-) True G41580
XM_043242921.1 mRNA downstream 6450 212264 ~ 219260 (-) True LOC122347555
XM_043241595.1 mRNA downstream 46577 158596 ~ 179133 (-) True LOC122346743
XM_043242451.1 mRNA downstream 174801 14369 ~ 50909 (-) True LOC122347266
XM_043242452.1 mRNA downstream 174815 14369 ~ 50895 (-) False LOC122347266
XM_043242453.1 mRNA downstream 193086 14369 ~ 32624 (-) False LOC122347266
XM_043241451.1 mRNA upstream 1342 414895 ~ 426693 (-) True tpra1
XM_043241447.1 mRNA upstream 13503 427056 ~ 430558 (-) False trim107
XM_043241448.1 mRNA upstream 13503 427056 ~ 430548 (-) False trim107
XM_043241446.1 mRNA upstream 13503 427056 ~ 430379 (-) False trim107
XM_043241450.1 mRNA upstream 13503 427056 ~ 430379 (-) True trim107
TU61336 other downstream 50515 173968 ~ 175195 (-) False LOC122346743
TU61334 other downstream 61653 163323 ~ 164057 (-) False LOC122346743
TU61792 other upstream 1289280 1702833 ~ 1707408 (-) True G41781
TU62012 other upstream 2427109 2840662 ~ 2843258 (-) True G41955
XR_006251230.1 other upstream 2678987 3092540 ~ 3107897 (-) False cep170ab
XR_006251231.1 other upstream 2681237 3094790 ~ 3107897 (-) False cep170ab
XR_006251245.1 other upstream 3230713 3644266 ~ 3644404 (-) True LOC122347626

Expression Profile