RNA id: XM_043241451.1


Basic Information

Item Value
RNA id XM_043241451.1
length 2084
RNA type mRNA
GC content 0.50
exon number 11
gene id tpra1
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 414895 ~ 426693 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggccatctttgatACGATAACGCATTCACGCCGACTTTTATCTGACAAGCGAGTCGCGACTGACGCATCAGTTTCATTCCGCCTGTAAACAACAAGCCACCGACACGCCGACGAAAGTTATTATGCCTCGACTAATAACTTATGGTCACGTTAATACCGAAGCGCGCCGGCTCTGATCTGAGACCCTCAGCAGTTTAAAGGTTTGATCCAGAATGCTGGAGACCGTGACCGATGCAGCAAGCTTGCTCCATTATGCCAACGCCAGTGTGTTTCCCACCGCGGACAACGGCTCTGAATTCAACCCTGACCATGAGAGCAACATCACCAAACCACACAGGTGCTTGCAGGTCCTGTACGACGACATCGGGCACTCCAGGGTCCGTTACTGGGACGTGATGCTGCTCGTCCCAAACGTGGCTTTCCTGGTCTTCCTGATGTGGAAGCTTCCTTCGGCTCGGGCTAAGATCCGGCTGACCTCCAGCCCCATATTCGTGGCGTTCTACATCCTGGTGTTTGTGGTGGCGGCTGTAGGAATAACTAGAGCCATCGTCTCCATGACCGTCAGCACATCCAGCTCCGCCACACTCATAGACAagGTGCTTTGGGAAATCACCAGATTCTTTTTATTGGCAATTGAGCTCAGCGTCATTATACTCGGGCTGGCGTTCGGCCATCTGGAGAGCAAGTCCAGCATCAAGCGCGTGCTGGCCATCACCGCGGTCCTGTCTCTGGCCTACTCCATCACACAGggGACTCTGGAGATTCGTTTCCCAGACAAACATCTCTCCGCCAATGACTTCAACATCTACGGCCACGGCGGACGCCACTTCTGGTTGGCCAGTTCCTGTTTCTTTTTCCTGGTGTATTCCCTGATCGTCATTCTACCCAAAACCCCGGTCAGAGAGCGGATCTCGTTGCCCTCCAAGAGGAGTTTCTACGTGTACGCTGCTATCCTGTCGGTGCTCAATCTGGTTCAGGGTTTGGGAAGCGCTCTGCTCTGCGCCGACATCATCGAAGGCCTCTGCTGTGTGGATGTGACCACATTCCTCTACTTCTCCGTCTTCGCTCCTCTGATCTATGTGACGTTCCTCAAAGGATTCTTCGGTTCCGAGCCCAAAATCCTCTTCTCCTACAAGTCACAAATCGACGAGCCGGAGGACACGGACGTTCACCTGCCCAACACCTCGTCGTCCGGTCTGGGCCGGAAGGATCTGGATCACGGCTCGTACTCCAGCACGCAGATCGACGGCTCCGGGGCCTATCTGGACGACGTGGTTTCGGGGCCGTTCGGAGCCCACAGCATCAACAGCATCGACAGCGACCGCTGGAGGGCCCTCAACGCCTGACCTCGAGCGGAAGCGGTTTTCCCCGTCACTTATTTAAGATCGATTTCATTTGTATTCCGTGAATCCAACATTCCTCGTGTAACACCGGTGCTCTTACTTTGACGTCTGTGTGCTGCTGCGGGCAACTCTTTTGGACTTTGTGACGtgcataatgtaatatatttctgctGAAACCATAATCGATCGCCGCTAGATGATTTCACAGTTACGCTACCGATACCAGCGAAAGATCTGCTCGTGTTTTGATGCTCGTTCTCTGCCGTCAGGGTTGTTCTGCACTGATTTGGCTCCTTTGCTTGGCTAATTTGAAGTCTTAAGGACCCTGTAATCTACCTTGACTCTGTTCATATGCTTCATATGGGCCGAGCGATCATCTAGAAATTTGTAAAAACGTTTATTTCTCAGCGCTACGTCGTAGTGTTTtcttttggatttttatttattttagttatcgGAGGAGTTTTGTTTTAGCCTTGGGTTCAGTTCTTAAAGTGAAAGCTTAAATCGTGATCttgacctttgttcatctttctAATGGATAATGAAACCGGCACCGGCTCAAGTCAGGCTTGTCTTCGTGTCATTCCACGTggaagaaagtgaagaaaaaggACCAtgctgggagagagagaggatttgtcccgctttgttttatttgataaaataccACTAGTTAATTACATCCTAACTTTTtcggtgcacaaaaaaaaaattctattaaatCTGGCCTGAGTAAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K22988 TPRA1, GPR175; transmembrane protein adipocyte-associated 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61342 lncRNA downstream 21703 391418 ~ 393192 (-) False LOC122346746
XR_006251236.1 lncRNA downstream 203848 208054 ~ 211047 (-) True LOC122347556
TU61325 lncRNA downstream 335454 77927 ~ 79441 (-) True G41455
TU61359 lncRNA upstream 87109 513802 ~ 567804 (-) True G41478
TU61383 lncRNA upstream 185279 611972 ~ 613737 (-) True G41490
TU61452 lncRNA upstream 350722 777415 ~ 833159 (-) True G41530
TU61489 lncRNA upstream 480355 907048 ~ 908023 (-) True G41563
TU61514 lncRNA upstream 598309 1025002 ~ 1025752 (-) True G41580
XM_043241457.1 mRNA downstream 1151 410545 ~ 413744 (-) False chchd6b
XM_043241452.1 mRNA downstream 1241 399242 ~ 413654 (-) True chchd6b
XM_043241453.1 mRNA downstream 1294 399242 ~ 413601 (-) False chchd6b
XM_043241454.1 mRNA downstream 1313 399242 ~ 413582 (-) False chchd6b
XM_043241455.1 mRNA downstream 1326 399242 ~ 413569 (-) False chchd6b
XM_043241447.1 mRNA upstream 363 427056 ~ 430558 (-) False trim107
XM_043241448.1 mRNA upstream 363 427056 ~ 430548 (-) False trim107
XM_043241446.1 mRNA upstream 363 427056 ~ 430379 (-) False trim107
XM_043241450.1 mRNA upstream 363 427056 ~ 430379 (-) True trim107
XM_043242506.1 mRNA upstream 5047 431740 ~ 442780 (-) True zgc:123305
TU61311 other downstream 1342 225710 ~ 413553 (-) True G41443
TU61336 other downstream 239700 173968 ~ 175195 (-) False LOC122346743
TU61334 other downstream 250838 163323 ~ 164057 (-) False LOC122346743
TU61792 other upstream 1276140 1702833 ~ 1707408 (-) True G41781
TU62012 other upstream 2413969 2840662 ~ 2843258 (-) True G41955
XR_006251230.1 other upstream 2665847 3092540 ~ 3107897 (-) False cep170ab
XR_006251231.1 other upstream 2668097 3094790 ~ 3107897 (-) False cep170ab
XR_006251245.1 other upstream 3217573 3644266 ~ 3644404 (-) True LOC122347626

Expression Profile