RNA id: XM_043241450.1


Basic Information

Item Value
RNA id XM_043241450.1
length 2287
RNA type mRNA
GC content 0.53
exon number 2
gene id trim107
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 427056 ~ 430558 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGTTACGCGAACCTTCGTGAGGCGTCGTGACGTTAACGGAACCGAATCGGTAACACGGTTACAGACGAGCGACGGAGGCGGCGTTAACGGGCCCGCGTCGCGCTCGTCTCGGTTCACGCGAAAACGTGACGTCGCCGTGATCGTGGCGGTGAACGCGCTAAAACGCACCGGGGGAAATGGCCGCGCGTGAACGGCTAAAAACGCCCGCGTCTTTCtgagaggatttttttttaatttcgcGGTCGTTCCGCTCGCGTTTGACGGCGGGGCGAGGTCTGCGGCTAAGCGGTTCACCTCGCGGCTCGCGGCTGGAGGAAGGTGTCGGAGTCGAGCCTCGGTCGCGCGCTGCTCGCCCCCGCCTGGCGCCTTCAGCTCGggagaaaaatgagaaaagcagTCGTAAGGGTCGGTTCTCATACCAAAGACGACCGTCATGGCGCACGGGTCTCCTGACGGGTATCTGGAGTCGGACCTCACCTGTCCCATCTGTCTCCGTCTCTTCCTCGACCCGGTCACTCTTCCCTGCGCTCACAGCTTCTGCTTGGTTTGTCTGGAAACACCAGAGAGGGACAAAACGTCTGGGTTCGATCAAGCTCTTTGTTGCCCGGTATGTGGACAGGAACATCTCAGCCCAGAGTCCCTGCCGAGAAACATCAAACTAAAACAGATAGTGGAGAACTACAAAGCCAACAGCATCAGCGGTGAACTTCAATCCGGTGCAGAAGACAAGATACTCAATGAACAGCCGTCTCCAGAAGACTCCGATGTCTGCACCTCAACAGATTCTGGGAAAAGCTCCCTTGTGGAGAACGAAACCGGCGAACGGAGGTCTAGGCTGAATCCCGTCGTGACTAGTCTCCAAGAAAAGCTGGCTCTGGTAGACGACCTGGCGGATAAGGAAAAGGCCAGAGAGGCCGCGGTGGAAGCGGCGCACGCAGATCTGAGGAAGGACGTAGGAAGCGTGCTGGAGGAAATGGCGGAGCTGGTGAAGACCTACAGCTCCACTGCTTCGAGGCTCCTGGAGGCCGAGTTGAGACCCAGAGAAGACGCTGCTGGGAAAAGAGCGCGAATGCTGTCCGACCTCCGGGAGTCGCTGAGGTCCGCCGAACTTCGGGTCAGCGCGTTAGCGGACGAGACGGACGAGGCGTGTTTCCTCGATGGAGTCCGAGACGTCGAGAACCGGGTGTCCGGCGTGACCCTGGAGCCTCTGCAGGACGTCTCGAGCGATTTGGAGCTGTCCAGCAGTTTGAAGAAAGTCTGTGAGAAGATCGAGCACCAAAACGTCCAACTCCGTCTCGGGCTTGGATCGGCTCAGCGGGCCTTGCGCGTCGCTCTCAACCCGTCCGAAGTGACCTTCGACCCCGATACCATCCACCCCAACCTGCTCTTATCCGAAGACCTCAAAACGGTGTGTTTTAGCGCCGCCAAACAGCCGTATCCGGCCCTTTCTCAGAGGTTTTCCAGTTTCTTCCAGGCTTTGAGTTCCCAGAGCTTCGCCCGAGGAGAGCATCTCTGGAACTTCCAGGCTGAAGGCTGCTCCTGGGTTCTGGCCGTGTGTTACGGCGATCTGCCTAGATCTGGTTCTGGTAGCGGTCTGGAGAGCAGCTCTGGATCCTGGTGCCTCATGTACTGTGATAATCTTCTGCGGGCGTATGAGAAAGGCAAGGACACTCCGCTTAGACGTACGCCGTCTCTAAAGAGAATGGAGATACACCTCAGCTTCAGCGGCGGCACTTTAGCGTTTTACAGCGTCAGCGACGTGAGTGGAGATAAAACTCATCTGCACACTTTTAACGTCAGCTTCAAGCACCCGGTGTATCTGGCTGTGAGGATGATGTCCGGTCAGCCCAAAGCACACATAACTCTCAACTAGGGACTGAAGAAACCCTACGCCTTATGCAACacattgctaaaataatttcatagaTCTCATTCCTCCATTCTTATCCTGTTTTCGTAATGTCATGTTGCAGTACATCAATGCTTAATTATGCATCGTTCTACAGTAGACCGTCACATGCTTTCTGTTtgcagtatttaatttaatcatataCGGTGTTCATCGGGCATGTGATGTTGCTTTTAAGCATGTGACATTTGTTGAACTTCAATAATACAAGACCagattgcatttaaaacatttctaattctGATTATATGCTGTGCCTTTCTTTTAACGTGCATTAATACACTATATGtctaaattttaaataagttgTAGAATCTACCTTTTTTCTAAATACTGCATTATACTGTACtatttattgcataaatattgtattgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61342 lncRNA downstream 33864 391418 ~ 393192 (-) False LOC122346746
XR_006251236.1 lncRNA downstream 216009 208054 ~ 211047 (-) True LOC122347556
TU61325 lncRNA downstream 347615 77927 ~ 79441 (-) True G41455
TU61359 lncRNA upstream 83423 513802 ~ 567804 (-) True G41478
TU61383 lncRNA upstream 181593 611972 ~ 613737 (-) True G41490
TU61452 lncRNA upstream 347036 777415 ~ 833159 (-) True G41530
TU61489 lncRNA upstream 476669 907048 ~ 908023 (-) True G41563
TU61514 lncRNA upstream 594623 1025002 ~ 1025752 (-) True G41580
XM_043241451.1 mRNA downstream 363 414895 ~ 426693 (-) True tpra1
XM_043241457.1 mRNA downstream 13312 410545 ~ 413744 (-) False chchd6b
XM_043241454.1 mRNA downstream 13474 399242 ~ 413582 (-) False chchd6b
XM_043242506.1 mRNA upstream 1361 431740 ~ 442780 (-) True zgc:123305
XM_043241853.1 mRNA upstream 22624 453003 ~ 460273 (-) False LOC122346944
XM_043241851.1 mRNA upstream 22624 453003 ~ 460273 (-) False LOC122346944
XM_043241852.1 mRNA upstream 22624 453003 ~ 460273 (-) True LOC122346944
XM_043242199.1 mRNA upstream 31556 461935 ~ 554172 (-) False dlgap4b
TU61311 other downstream 13503 225710 ~ 413553 (-) True G41443
TU61336 other downstream 251861 173968 ~ 175195 (-) False LOC122346743
TU61334 other downstream 262999 163323 ~ 164057 (-) False LOC122346743
TU61792 other upstream 1272454 1702833 ~ 1707408 (-) True G41781
TU62012 other upstream 2410283 2840662 ~ 2843258 (-) True G41955
XR_006251230.1 other upstream 2662161 3092540 ~ 3107897 (-) False cep170ab
XR_006251231.1 other upstream 2664411 3094790 ~ 3107897 (-) False cep170ab
XR_006251245.1 other upstream 3213887 3644266 ~ 3644404 (-) True LOC122347626

Expression Profile