RNA id: XM_043241452.1


Basic Information

Item Value
RNA id XM_043241452.1
length 1115
RNA type mRNA
GC content 0.50
exon number 8
gene id chchd6b
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 399242 ~ 413744 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ataaaaagtaatatataaaaaaatcccGCGACTTACATGTGACGTCAGTGTATCAAAtagaactacatttcccatctgcGTTTGGCGAGTCACGTGATGCGCGATAACCGTAATAGCGTGTCTGATGATTTTATCCGCACGCAGCGGGACGCAGTGACCCTGAAGTGAATCGGGGTGATTTTATTTCTCTTGTTGGAGCGTTTGGGGTGATTTGGGGCTGATGGGGGCCGCGGACAGCAGGAGCAGGTCTGTGTCGTACGGACTCGACGAACAGGACAATGTCACGGTTATACACGGAGTAAAGTTGTCCGGAGATGTTCTTCAGCGGATGCGAGAGTCTggaccatcatcatcatcatcatcactcaAAGCAGAGAGCACCAAACCTGAACCAGGTACGATCACTTCCGCTCCTGTCTTCAACTACTCTCGTTTCTTTCTCATGTTGGTCTGTTATTCTGATCTCCCAGGGCCGTCCAGACCGTCCTCCACAGAGACCCAGGAGGAGCTCAGAAGACGGTTCGAGCGCGAGCAGGCTCTGGTCCAGGAAGAGTTGGCCCGGATCAGccgtagagagagagagatatcagGAGACGATATAAAGACACGGCAGGAAGTAGACAAAACACACAACCTgCCGGATGAGTTGAGCGTTCGGGCCCGGCagctgaagaagaaagaaaacgagCTGAAACATCTGGAGCAGTTTTACAAGGAGCAGCTGCATCTGATGGAGAAGAAGAACACTGAATATTATCAACAGACCGCACACATGTACGAGCAGCAGGCGCTCAAAGCAGACTCCAGAGTCAAgcctCGTCAGGTGAGTCCGGTCTGCCCCGAGCTGCAGTCTCAGGTGTTGAGCTGCTACAGACTGAACTCTCAGCAGACACTGCACTGCTCACAGCTCGCCAAAGACTACATCAACTGCATCAACTCCAAGAAGAACCTGCTGGTGAACcatggatgatgatgatgatgatgattggtGCTAAAAGAGAAGAacagtgttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcggtatCATTGTGTTGGTTTGTTGAGCTGATCTTCATTTACTGTGATCAAATAAAGTCTCTTCAGCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61342 lncRNA downstream 6050 391418 ~ 393192 (-) False LOC122346746
XR_006251236.1 lncRNA downstream 188195 208054 ~ 211047 (-) True LOC122347556
TU61325 lncRNA downstream 319801 77927 ~ 79441 (-) True G41455
TU61359 lncRNA upstream 100148 513802 ~ 567804 (-) True G41478
TU61383 lncRNA upstream 198318 611972 ~ 613737 (-) True G41490
TU61452 lncRNA upstream 363761 777415 ~ 833159 (-) True G41530
TU61489 lncRNA upstream 493394 907048 ~ 908023 (-) True G41563
TU61514 lncRNA upstream 611348 1025002 ~ 1025752 (-) True G41580
XM_043241597.1 mRNA downstream 4898 389416 ~ 394344 (-) True LOC122346746
XM_043241135.1 mRNA downstream 30140 260055 ~ 369102 (-) True plxna1b
XM_043241134.1 mRNA downstream 30140 262221 ~ 369102 (-) False plxna1b
XM_043241596.1 mRNA downstream 170684 225686 ~ 228558 (-) True LOC122346744
XM_043242921.1 mRNA downstream 179982 212264 ~ 219260 (-) True LOC122347555
XM_043241451.1 mRNA upstream 1241 414895 ~ 426693 (-) True tpra1
XM_043241447.1 mRNA upstream 13402 427056 ~ 430558 (-) False trim107
XM_043241448.1 mRNA upstream 13402 427056 ~ 430548 (-) False trim107
XM_043241446.1 mRNA upstream 13402 427056 ~ 430379 (-) False trim107
XM_043241450.1 mRNA upstream 13402 427056 ~ 430379 (-) True trim107
TU61336 other downstream 224047 173968 ~ 175195 (-) False LOC122346743
TU61334 other downstream 235185 163323 ~ 164057 (-) False LOC122346743
TU61792 other upstream 1289179 1702833 ~ 1707408 (-) True G41781
TU62012 other upstream 2427008 2840662 ~ 2843258 (-) True G41955
XR_006251230.1 other upstream 2678886 3092540 ~ 3107897 (-) False cep170ab
XR_006251231.1 other upstream 2681136 3094790 ~ 3107897 (-) False cep170ab
XR_006251245.1 other upstream 3230612 3644266 ~ 3644404 (-) True LOC122347626

Expression Profile