G41961


Basic Information

Item Value
gene id G41961
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 2854039 ~ 2856147 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU62020
TTCCTGTCCTGGATGTTTCACCAGAGGCCTCTGCAGAAGAGTTACTAAAGAACTTCCAGCAGACATGGGCAGAGAGTGAAAATGTCTTCAAAACCTGGGCTTCACTGTGTCTGAGCAGCACAGATCACAGACTGTTTCACACCAACACCAGACTGTGGTCACCGAAAATACGGGTGCCAGAGTCCGAACTGTGTCGGGTATGTCGGAAGAGGGTGTATCCCATGGAGTCTCTCATAGCAGACAAACAAAACTTccataaaagctgttttagatGTGCCCACTGCAGCAGCCAGCTAAGTCTTGGAAATTATGCTTCTCTCATGGACCGAGAATGTACTGCAAGCCACACTACAAACAACTTTTCAAGTCTAAAGGCAACTATGATGAAGGATTTGGAGAAAGGCCCCACAAAGAACTTTGGAGTACAAAGAATCAGAACAACTCATCAGagacaaacaacatgaaaaacaacccTGTCAATTTTAATGTCAAAGTAGCTCACAGTCCACAAGAAAATGACCCCAACATCACAGACAGCATGATTCAAGAAAAGACG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0031497 chromatin assembly biological_process
GO:0048468 cell development biological_process
GO:0006323 DNA packaging biological_process
GO:0006325 chromatin organization biological_process
GO:0022607 cellular component assembly biological_process
GO:0006333 chromatin assembly or disassembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0071824 protein-DNA complex subunit organization biological_process
GO:0065004 protein-DNA complex assembly biological_process
GO:0034728 nucleosome organization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0071103 DNA conformation change biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62020 True 556 lncRNA 0.45 3 2854039 2856147

Neighbor

gene id symbol gene type direction distance location
LOC122347520 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 coding downstream 58927 2792631 ~ 2795112 (-)
LOC122347517 itm2ba,LOC107677554,LOC107584788,LOC107660034,LOC107705560,LOC107581357 coding downstream 61304 2786460 ~ 2792735 (-)
LOC122346433 LOC107718079,LOC107589806,LOC107722642 coding downstream 127797 2705533 ~ 2726242 (-)
trak2 LOC107746594,LOC107582328,LOC107686751,LOC107672648 coding downstream 994695 1839000 ~ 1859344 (-)
unc50 unc50,LOC107686789,LOC107746628,LOC107672653 coding downstream 1085939 1765156 ~ 1768100 (-)
rtn4a rtn4a,rtn4,LOC107678208,LOC107753895,LOC107672668,LOC107752117 coding upstream 167238 3023385 ~ 3034793 (-)
mtif2 mtif2,LOC107578070,LOC107581382,LOC107752114 coding upstream 185325 3041472 ~ 3048286 (-)
ccdc88aa ccdc88aa,LOC107752102,LOC107678216,LOC107581383 coding upstream 192767 3048914 ~ 3068202 (-)
pld5 si:ch211-194e18.2,LOC107678171,LOC107752113,LOC107567729,LOC107581384,LOC107753911,LOC107672683 coding upstream 213555 3069702 ~ 3090490 (-)
si:dkey-261j15.2 LOC107678225,LOC107752101,LOC107581302 coding upstream 330420 3186567 ~ 3188418 (-)
G41948 NA non-coding downstream 25331 2828245 ~ 2828708 (-)
G41939 NA non-coding downstream 34448 2818031 ~ 2819591 (-)
G41921 NA non-coding downstream 80676 2771288 ~ 2773363 (-)
G41905 NA non-coding downstream 291398 2562429 ~ 2562641 (-)
LOC122346779 NA non-coding downstream 825129 1942428 ~ 2028910 (-)
G42044 NA non-coding upstream 179046 3035193 ~ 3035582 (-)
G42042 NA non-coding upstream 183376 3039523 ~ 3041038 (-)
LOC122346399 NA non-coding upstream 329084 3185231 ~ 3186557 (-)
G42080 NA non-coding upstream 432744 3288891 ~ 3289983 (-)
G42254 NA non-coding upstream 634775 3490922 ~ 3491261 (-)
G41955 LOC107735028,LOC107705557,LOC108430057 other downstream 10781 2840662 ~ 2843258 (-)
G41781 NA other downstream 1146631 1702833 ~ 1707408 (-)
G41443 NA other downstream 2440486 225710 ~ 413553 (-)
LOC122346746 plxna1b,plxna1,LOC107582336,LOC102795829 other downstream 2459695 389416 ~ 394344 (-)
LOC122346743 dlgap1a,dlgap1,LOC107686064,LOC107550721,LOC107584464,LOC107752864,LOC107690825,LOC107554879,LOC107582307,LOC107705865 other downstream 2674906 158596 ~ 179133 (-)
cep170ab cep170l,LOC107581301,LOC107678228,LOC107672679,LOC107567737,LOC107753897 other upstream 236393 3092540 ~ 3107938 (-)
cep20 fopnl,LOC107706683,LOC107713084 other upstream 1096381 3952528 ~ 3954331 (-)
G42351 NA other upstream 1102220 3958367 ~ 3961542 (-)
cdk15 cdk15,LOC107706659,LOC107677597,LOC107660030 other upstream 1538260 4394407 ~ 4415213 (-)
nudt15 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 other upstream 1637765 4493912 ~ 4497418 (-)

Expression


Co-expression Network