G41939


Basic Information

Item Value
gene id G41939
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 2818031 ~ 2819591 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU61995
ATTTAATCTACCCACATATCATACACAAGGTATTCacaatacaatttataatattaataaattaatgatcaTAAAACTATTTCTCTCCAGATGCAcgataaacataaaaataaactttaaatattttggcaTCTTCAAAAGGACAatcttctgtcatcatttagtcaccatacattagggctgcacaattaattttCTAACTGCAGTTACAATTATGGATGCCATGTTCAAATAggcaattaataatttaaagttcACTTATGTTATTCTATGTgcttaagatgtgtttttttatttgggtaaagggtttttccattgttttaattataaatttagtataacattataataacatttatttaatttttttttatttaaggaaTAAACCAATTCAATGTATAATTGACATTTGAGGCATAATACTATAGAGCTGCTACTACTACTGAAAGTGTTTTAGCttatgttcatgtaaaaatatggcATGCAGTTGCTTCTAACCATCGTATAAACAGTGTAATTTGTGGTAGTCACAATTAATCTtcgcaattacaatttcaaggAATAATccacaattatgatttttgtcataatcagTATGCAGCCCTACCATACATCGTAGCATTCCAGTTTCCTTAGtcagataaacaaaaaatatctgtGACACCATAAATGCAAGTTGACAGGACCCTCAGCAGTAATCATTGGATGAATCAATGGCCTTATTAAAGGAAACAATAGGTGTGTGAGaaaaatatgcttatatattacatttcttaaacTATAAACCATCACTTCAGGCAAATATGAGTTCACATCTTATGTAATCATTATGTAAGAGCTTTGCAAAACTCACTCGAAAAGTGATGTGGACTGTCACTTCTGTGAGTCTGTGATAATGTTCACAGCACGCCGACAGTTGGTCGGAAGCGAAGTCTGAAGTTTAAAAAGATTGATTCAtcaacttttttgtttgtataaccGTTgtgtttgggggtttttttgcatgatttttgaAGCATCAACTTTGAGGGACCTATCCATTTGCATTATATGGACTCAAAAATTTTCTGTTTGCGTTTCACAGACGAAAGAAAGTTGTATACATTTGGGATGCCacaagggtaagtaaatgatgacagatctGTCAAATTTACATAGTGGTTCTTCCTATTTTAGTGTAAAGTAATTATCTACAGCATGTATTTTACAAATCTTGTACAAAATACACATAAAGTTGTGATTTGAGTCCAAAGAAATATGGTTGTAAAACTTTATTGCTGTTCGCCCAGTTTAAAGCATCTGTCTCCTAGCCGTAGGTCGTATGATCTGCTGACTGTGCTGTGCTGCACAGGTggaaacatattaaaataaaagacttcATTTTTCAAGCTTTTACACCTACAAAGAGACGGTCTCTAAGGTCCGTTGATGTGAACCATAATTAAAAACCCTCTGGAGTCTCACAAATGGCTCACTACCTCTTCCCTTTCctgcttgttttgtgtgtttctaGAGTTTGACCTGTCTGTGTTGGAGAAGCTCCCAGACCGGCTGCCCTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61995 True 1561 lncRNA 0.34 1 2818031 2819591

Neighbor

gene id symbol gene type direction distance location
LOC122347520 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 coding downstream 22919 2792631 ~ 2795112 (-)
LOC122347517 itm2ba,LOC107677554,LOC107584788,LOC107660034,LOC107705560,LOC107581357 coding downstream 25296 2786460 ~ 2792735 (-)
LOC122346433 LOC107718079,LOC107589806,LOC107722642 coding downstream 91789 2705533 ~ 2726242 (-)
trak2 LOC107746594,LOC107582328,LOC107686751,LOC107672648 coding downstream 958687 1839000 ~ 1859344 (-)
unc50 unc50,LOC107686789,LOC107746628,LOC107672653 coding downstream 1049931 1765156 ~ 1768100 (-)
rtn4a rtn4a,rtn4,LOC107678208,LOC107753895,LOC107672668,LOC107752117 coding upstream 203794 3023385 ~ 3034793 (-)
mtif2 mtif2,LOC107578070,LOC107581382,LOC107752114 coding upstream 221881 3041472 ~ 3048286 (-)
ccdc88aa ccdc88aa,LOC107752102,LOC107678216,LOC107581383 coding upstream 229323 3048914 ~ 3068202 (-)
pld5 si:ch211-194e18.2,LOC107678171,LOC107752113,LOC107567729,LOC107581384,LOC107753911,LOC107672683 coding upstream 250111 3069702 ~ 3090490 (-)
si:dkey-261j15.2 LOC107678225,LOC107752101,LOC107581302 coding upstream 366976 3186567 ~ 3188418 (-)
G41921 NA non-coding downstream 44668 2771288 ~ 2773363 (-)
G41905 NA non-coding downstream 255390 2562429 ~ 2562641 (-)
LOC122346779 NA non-coding downstream 789121 1942428 ~ 2028910 (-)
G41825 NA non-coding downstream 888178 1929677 ~ 1929853 (-)
G41822 NA non-coding downstream 889775 1921521 ~ 1928256 (-)
G41948 NA non-coding upstream 8654 2828245 ~ 2828708 (-)
G41961 NA non-coding upstream 34448 2854039 ~ 2856147 (-)
G42044 NA non-coding upstream 215602 3035193 ~ 3035582 (-)
G42042 NA non-coding upstream 219932 3039523 ~ 3041038 (-)
LOC122346399 NA non-coding upstream 365640 3185231 ~ 3186557 (-)
G41781 NA other downstream 1110623 1702833 ~ 1707408 (-)
G41443 NA other downstream 2404478 225710 ~ 413553 (-)
LOC122346746 plxna1b,plxna1,LOC107582336,LOC102795829 other downstream 2423687 389416 ~ 394344 (-)
LOC122346743 dlgap1a,dlgap1,LOC107686064,LOC107550721,LOC107584464,LOC107752864,LOC107690825,LOC107554879,LOC107582307,LOC107705865 other downstream 2638898 158596 ~ 179133 (-)
G41955 LOC107735028,LOC107705557,LOC108430057 other upstream 21071 2840662 ~ 2843258 (-)
cep170ab cep170l,LOC107581301,LOC107678228,LOC107672679,LOC107567737,LOC107753897 other upstream 272949 3092540 ~ 3107938 (-)
cep20 fopnl,LOC107706683,LOC107713084 other upstream 1132937 3952528 ~ 3954331 (-)
G42351 NA other upstream 1138776 3958367 ~ 3961542 (-)
cdk15 cdk15,LOC107706659,LOC107677597,LOC107660030 other upstream 1574816 4394407 ~ 4415213 (-)

Expression


Co-expression Network