G42042


Basic Information

Item Value
gene id G42042
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 3039523 ~ 3041038 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU62122
AAGATGAATAATCAAGACTCGAGAGACTCATTTGAATGTGGCAGGccaattttatttacaaagtaCAAATTCCAGAACGATCTCCTGCATTACACGGAGCATGTTGTCAGGACTGTACTTCACTTGTCCTCTGGTTTGTTGAAGCAGTAAGTCAGGCAGCACTTTCCGCAGTAGTGACGGTCAAAGTGGCTGGCCATGAACACACCGGCTCCACACTCATCCGCAGGACACTCGCGGCGCAGGCGGTGGATCTTGCCGTTCTCATCAACCTGTAGTATTTCAGCACAGCGAGCTTGACCTTCTTTCTCTTGTGCTTGTTCTTCTTGGGGGTGGTGTAGgacttcttcttcctcttcttagCACCACCGCGAAGTCTCAGCACAAGATGCAGTGTGGACTCCTGAATGAATGATCCCAATGAAGTTAGTTGAAATATTACATGGCAGGAAAAGGAGCCTAAAATTCTACATGAATGCTCCAACCTTCTGAATGTTGTAGTCAGACAGGGTGCGTCCATCCTCCAGCTGTTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGGATTCCTGCATTCAACACATGCAGAGTCATCCTTttgtca
>TU62124
AAGATGAATAATCAAGACTCGAGAGACTCATTTGAATGTGGCAGGccaattttatttacaaagtaCAAATTCCAGAACGATCTCCTGCATTACACGGAGCATGTTGTCAGGACTGTACTTCACTTGTCCTCTGGTTTGTTGAAGCAGTAAGTCAGGCAGCACTTTCCGCAGTAGTGACGGTCAAAGTGGCTGGCCATGAACACACCGGCTCCACACTCATCCGCAGGACACTCGCGGCGCAGGCGGTGGATCTTGCCGTTCTCATCAACTTGTAGTATTTCAGCACAGCGAGCTTGACCTTCTTTCTCTTGTGCTTGTTCTTCTTGGGGGTGGTGTAGgacttcttcttcctcttcttagCACCACCGCGAAGTCTCAGCACAAGATGCAGTGTGGACTCCTGAATGAATGATCCCAATGAAGTTAGTTGAAATATTACATGGCAGGAAAAGGAGCCTAAAATTCTACATGAATGCTCCAACCTTCTGAATGTTGTAGTCAGACAGGGTGCGTCCATCCTCCAGCTGTTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGGATCCTTCCTTGTCTTGAATCTTAGCCTTGACATTTTCAATAGTATCAGAGGGCTCAACCTATAACATGTAGaagaaaaatactttaaacaATTATCAATGTACATgagatctattttttttttaaagacacaaaccactttttattgttttttcttttgatggaacattgaatttaaaatgacacgTTTACGCATCTTTTGAAATCTAACTGGCACCTATTAATATTAAAGCTGTTAACTGAAGAAAAATTTCAGTTAATATTACATAACTAAATTAAACCGatatcttttaaatattcaagtgTATGCACGTTTTACGTACAATTGGCATTTATCTCTTCTACTGTACAAGTCTAACGTTAGCGGAGCCATATCGTTAGCATAATTTCGGGCTTTagcaaaactataaaaatatagctTTTACTTACTTTAGTGCTACCTATGCTATAGATTTATACTTGAATACAGATATAACGCGATAGAATTAGCCCCGCAAAGACTAGAATTggaataaaataagacaaagtGTCGAAGTGTCTCGTGCGGCTCGGCTTTGCCTCACCTCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTCACGAAAATCTGCATCTTGAAGCTCAATCCACCTGTGCATAAGACAGAAATAAGTGTTTCTGtgtcattttgaagcatttatatatacgaacattatatttatttcgcCATTATTCGTTCGTAACATTCACTCACCACCAGCTCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62122 False 603 lncRNA 0.47 2 3040345 3041038
TU62124 True 1306 lncRNA 0.40 3 3039523 3041038

Neighbor

gene id symbol gene type direction distance location
rtn4a rtn4a,rtn4,LOC107678208,LOC107753895,LOC107672668,LOC107752117 coding downstream 4730 3023385 ~ 3034793 (-)
LOC122347520 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 coding downstream 244411 2792631 ~ 2795112 (-)
LOC122347517 itm2ba,LOC107677554,LOC107584788,LOC107660034,LOC107705560,LOC107581357 coding downstream 246788 2786460 ~ 2792735 (-)
LOC122346433 LOC107718079,LOC107589806,LOC107722642 coding downstream 313281 2705533 ~ 2726242 (-)
trak2 LOC107746594,LOC107582328,LOC107686751,LOC107672648 coding downstream 1180179 1839000 ~ 1859344 (-)
mtif2 mtif2,LOC107578070,LOC107581382,LOC107752114 coding upstream 434 3041472 ~ 3048286 (-)
ccdc88aa ccdc88aa,LOC107752102,LOC107678216,LOC107581383 coding upstream 7876 3048914 ~ 3068202 (-)
pld5 si:ch211-194e18.2,LOC107678171,LOC107752113,LOC107567729,LOC107581384,LOC107753911,LOC107672683 coding upstream 28664 3069702 ~ 3090490 (-)
si:dkey-261j15.2 LOC107678225,LOC107752101,LOC107581302 coding upstream 145529 3186567 ~ 3188418 (-)
ccdc85al ccdc85al,LOC107678233,LOC107551935,LOC107752111,LOC107672684,LOC107581303,LOC107753901 coding upstream 173273 3214311 ~ 3230123 (-)
G42044 NA non-coding downstream 3941 3035193 ~ 3035582 (-)
G41961 NA non-coding downstream 183376 2854039 ~ 2856147 (-)
G41948 NA non-coding downstream 210815 2828245 ~ 2828708 (-)
G41939 NA non-coding downstream 219932 2818031 ~ 2819591 (-)
G41921 NA non-coding downstream 266160 2771288 ~ 2773363 (-)
LOC122346399 NA non-coding upstream 144193 3185231 ~ 3186557 (-)
G42080 NA non-coding upstream 247853 3288891 ~ 3289983 (-)
G42254 NA non-coding upstream 449884 3490922 ~ 3491261 (-)
G42235 NA non-coding upstream 494461 3535499 ~ 3538618 (-)
LOC122346554 nfil3-5,LOC107706633,LOC107581326,LOC107678196,LOC107659971,LOC107713076,LOC107706696,LOC107678192,LOC107581323,LOC107659968 non-coding upstream 744861 3785899 ~ 3800450 (-)
G41955 LOC107735028,LOC107705557,LOC108430057 other downstream 196265 2840662 ~ 2843258 (-)
G41781 NA other downstream 1332115 1702833 ~ 1707408 (-)
G41443 NA other downstream 2625970 225710 ~ 413553 (-)
LOC122346746 plxna1b,plxna1,LOC107582336,LOC102795829 other downstream 2645179 389416 ~ 394344 (-)
LOC122346743 dlgap1a,dlgap1,LOC107686064,LOC107550721,LOC107584464,LOC107752864,LOC107690825,LOC107554879,LOC107582307,LOC107705865 other downstream 2860390 158596 ~ 179133 (-)
cep170ab cep170l,LOC107581301,LOC107678228,LOC107672679,LOC107567737,LOC107753897 other upstream 51502 3092540 ~ 3107938 (-)
cep20 fopnl,LOC107706683,LOC107713084 other upstream 911490 3952528 ~ 3954331 (-)
G42351 NA other upstream 917329 3958367 ~ 3961542 (-)
cdk15 cdk15,LOC107706659,LOC107677597,LOC107660030 other upstream 1353369 4394407 ~ 4415213 (-)
nudt15 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 other upstream 1452874 4493912 ~ 4497418 (-)

Expression


Co-expression Network