G42235


Basic Information

Item Value
gene id G42235
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 3535499 ~ 3538618 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU62477
CGGACACAAGGGACCACAGTTCAGAAAGAGGCTCGGCTCAGGCCTGCGACCAGGTCTCAAAGCACAAATGAATCCTTTAAAAGCGTAATGAAACCCAGGATTAGACGCGATCCGTTTCTGGCGCCTATCAGAGATCAATATAAGACATTACGCATAATATACAATATGATGAAATCGGTGGCTTTACTAAAGCGTGTTCCAGACCAGGAGGGACAGGTTTATTCAACGCTATCCTCTTTAATCTTCCAGCAGGTGTGGTCATTACATAAAGCACTTATGTCCAAAAGTTGCATTAAAACGGAATTAAGGCAAAAAAGAGACGACAGGaaatcattttcacatttttatttgagtgtAGTGTTACAGTCAGGGatcagagggagagaaagattTTGGTGTCTACATCATAATAATCAACGATAATCTTTCTTAATCTACTGTAACAGATAATTACACATCTCATCCATGATTTCTACgttttctatttattcatttattattcagcGAGAAACCGTTTTCCCCGTCATTGATTATGTTCACTGACACTGTATAGCCATCAAAATGATTTACCCAACACagtaaaaaaaccaacaaagaAAATGCGTAAGCGCACGGAGGTAAAAACACATTCACCGAAAACACTCACCaaaataaatacgtaaataaaaaacataataccGAAGAAGATAAAACTCAAAACTTCAAACCATCCTAAAGAGTCGACCCTAGCTACTCAGTAAGCACACAAACTATTTAATGCAAAGAATAAATGCTTCGAAATCAAGCAAACTATGTATTTGAGATTTTCTAACCCCTTTTGTTCCCAGATCAGCTAAAACAAAACGAGCAACTCAGTGACCCGATAACTTAGTTAATAAATAACCTTGTGAAAACACACTTTTGTAAGAAGATAAGGCCACAAAACTTAACAGACTGGACGATTCACACCGCAGACTTGTGTAGAAATGGCCCTGTTTGCATTATATGCTGAAATACTACCGTAAAGTGAGAGAAGCTAACTAAGCTTACGCTCCGTAGCCAAACTGGATCATCTGAGGTTAAGTGTCTTGCTAAACAGCACAGTTGTTTTGGTAACTCTCCCGTACCTGCGTCGCCCACACGTCGTTCAAAAGAATACAGGACTCCATTCGAATCACGTCCCGGGTCTAAAAGACTTGCCTCGTATAAATGTTCATACAGTCATAAGAGTCATAACAATGGGTTTTAGTGTCAAGGTGCCGGGTATTAAGTGGGAAGATGGCAAAAATGCAAACTATGTTAGAAACACATACAATTACAAACAGACTGTGTGTTAACACGTACGCAATGCAGGATAAGCGGTTCTGTTGTATTTACACTAGCTAGCACGGTAAAATAGGATAGCATTTGATATTCATTTGTCCTTGTACTCTGTAACAGATATAGATTATGTTATAGATTATGAagtgttaaacacaaaagacaacctacttaaaacaattacatacacatatacaaatacatatatatatatatatatatatatatatatatatatatatatatatatatagtttttgaaCTATAATGATCAAAAACACCATGAATAAAGCCCAAATGTGTGCACTGATTCAACAAAATTCACATTCGTTGGGGGCAATGTGTTAATCCGAACTCACATAACgcattattatgatattatgaattattatgaaattatgagCATGAAACATGCAAACGAACACAGATGCGTTATTATGCAGTTTGCCGCAGACCACTGACATACCAAGGTTTAGTGTACGTGTGTGCTATTTTAATGCTGTTCACTAATATGAAAGCAATAGCAAAAATAGGCAACAGTTTAGTGTCATAATCTACTAATCATATCAGTGGCAAATTAATATAGCAACTAATAAAGGACTGTTAAATAGCATatcactatctatctatctatctatctatttatctatctatctatctatctatctatctatctatctatctatccatctatccatctatttatctatctatctatctatctatcggaCTGACAGCACAGCATGCATGCCATGCAGACAATGCTAGTGATTCGTACAAAACAATACCCATGCAACAATTAGCCAAGTCAATTCTACAACAAAGGGGGCGTTTGATTGgaaaaagctttatttacaGCTTCAATCGAATGCGAATTACGGCGGACCACCCAACAGCAACCACGTTTGACTCACAATTCAGGCGAGGGACGTGCGACAAGCGTCCATTCCAGCACAGCGCAGCCACAAAGCAGCATGCAACACTAACCAGCTCCGTGTGACCGAACACACGCATGCAGCTCTAACCTCTACCACGCCACAAGGCCTAAAACACGACACACCGAGAGAAAGAGCCATGCAAAACGCAGCAACCGACCGAAAAAAACCTGCCAGACTGTGGATATTGTGTGCGCGAGGAGGCAAACCGCATTATAATCGCATCTGTACGAGGAAATACATAAGCACATAATACATGAGCACGCTCAGACCCAACGATCTTTTTCATGGCAGTCAAGGACAACACTGATCACCGATTGTAAACACGTGAGCGAGTGAGGGAGAGACGATAAAATCGACTAAACGTTGATGCTACAAACCGACACTTTTCGCACGGCGAAATGGGAAAAGTCGACAGAGGAAATATTGATCTGCGTGTGAATGCGTGTGCGCGCGTTCGAACATAGAGATGATTTAACACGGAGCGTAGAAGGCTCCGTAAACCACGTGATGTGTTTTTCCAGAATACAgcccaaaagaaaaaataacgaAAACCAAATCAAATAACGATTCCGAAGGCCAGATTAGTCCCACCCCTTTCCCAAAGCGAGAGACGGCCGCGTCGCGAAAATCCCGCCCCTCACTTCTTATTCTTCAGCTGATTGGCGAGCCAGTCGAGCCCTTCGTACAGACCGTCGCCGCTGGTCGCGCAGGTCGCTTGTATATACCAGTTGCGATGGCGGAGCGAATGTAGGCCGAGTTTGTCTGTGATCTCAGCTGCGTTCATCGCGTTTGGCAGATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62477 True 3036 lncRNA 0.40 3 3535499 3538618

Neighbor

gene id symbol gene type direction distance location
fkbp11 fkbp11,LOC107581312,LOC107706636,LOC107678175,LOC107659958,LOC107713087,LOC107551896 coding downstream 7394 3524889 ~ 3528105 (-)
cldn10a cldn10a,LOC107551926,LOC107581434,LOC107659956,LOC108436398,LOC108272592,LOC106097921 coding downstream 61406 3468854 ~ 3474093 (-)
cldn10e LOC107713114,LOC107660116 coding downstream 69118 3463041 ~ 3466381 (-)
LOC122346405 LOC107678165 coding downstream 74957 3458019 ~ 3460542 (-)
hs6st3a hs6st3a,LOC107713090,LOC107551898,LOC107660115,LOC107581308,LOC107678156 coding downstream 111333 3393593 ~ 3424166 (-)
ubn2a LOC107678214,LOC107581313,LOC107659962 coding upstream 79625 3618243 ~ 3633182 (-)
ttc26 ttc26,LOC107706703,LOC107678174,LOC107713086 coding upstream 95275 3633893 ~ 3641176 (-)
rpsa rpsa,LOC107581316,LOC107713109,LOC107551921 coding upstream 104315 3642933 ~ 3645898 (-)
LOC122347626 NA coding upstream 105648 3644266 ~ 3644404 (-)
slc25a38b LOC107706701,LOC107659965,LOC107581317 coding upstream 108431 3647049 ~ 3656920 (-)
G42254 NA non-coding downstream 44238 3490922 ~ 3491261 (-)
G42080 NA non-coding downstream 245516 3288891 ~ 3289983 (-)
LOC122346399 NA non-coding downstream 348942 3185231 ~ 3186557 (-)
G42042 NA non-coding downstream 494461 3039523 ~ 3041038 (-)
G42044 NA non-coding downstream 499917 3035193 ~ 3035582 (-)
LOC122346554 nfil3-5,LOC107706633,LOC107581326,LOC107678196,LOC107659971,LOC107713076,LOC107706696,LOC107678192,LOC107581323,LOC107659968 non-coding upstream 247281 3785899 ~ 3800450 (-)
G42331 LOC107096619 non-coding upstream 314642 3853260 ~ 3855532 (-)
G42354 NA non-coding upstream 417596 3956214 ~ 3957739 (-)
G42390 LOC107581410,LOC107551903,LOC107660016,LOC107713092,LOC107677531 non-coding upstream 435479 3974097 ~ 3979078 (-)
G42392 NA non-coding upstream 441282 3979900 ~ 3980589 (-)
cep170ab cep170l,LOC107581301,LOC107678228,LOC107672679,LOC107567737,LOC107753897 other downstream 427561 3092540 ~ 3107938 (-)
G41955 LOC107735028,LOC107705557,LOC108430057 other downstream 692241 2840662 ~ 2843258 (-)
G41781 NA other downstream 1828091 1702833 ~ 1707408 (-)
G41443 NA other downstream 3121946 225710 ~ 413553 (-)
cep20 fopnl,LOC107706683,LOC107713084 other upstream 413910 3952528 ~ 3954331 (-)
G42351 NA other upstream 419749 3958367 ~ 3961542 (-)
cdk15 cdk15,LOC107706659,LOC107677597,LOC107660030 other upstream 855789 4394407 ~ 4415213 (-)
nudt15 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 other upstream 955294 4493912 ~ 4497418 (-)
dnah9l dnah11,LOC107581427,LOC107677540,LOC108430841,LOC108272446,LOC103372266,LOC104955736,LOC107740597,LOC102781332,LOC107384434 other upstream 1170672 4709290 ~ 4738542 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G123757 NA non-coding CI01000024 null 4896544 ~ 4898680 (-)
rainbow trout (Oncorhynchus mykiss) G121677 NA unknown NC_048566.1 CM023220.2 21585421 ~ 21586101 (+)