cldn10a (cldn10a,LOC107551926,LOC107581434,LOC107659956,LOC108436398,LOC108272592,LOC106097921)


Basic Information

Item Value
gene id cldn10a
gene name cldn10a,LOC107551926,LOC107581434,LOC107659956,LOC108436398,LOC108272592,LOC106097921
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 3468854 ~ 3474093 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242550.1
CTGAAGAAGACTCATGTTTTGGTCAGGTCGGGTTATGTTTTGTAACTCCCTCTGGGGGCACGGAGGGAAACCATTAACGGGCTGAGCACAGGCAGGAAGACCCGTCTGACCTCCGCTTACCGgcaCCCGAGACACTCTACTAAAGTGAAGAACGTGGGAAAATGGGTAACATGGCAACAGAGATTGTTGCCTTCCTTCTCACCGTATCCGGATGGATTCTGATCTCTTCTACGCTCCCAACTGACTACTGGAAAGTGTCGTCAGTGGACGGGACAGTCATCACCACAGCAACCTTTTGGTCCAATCTATGGAAGACGTGCGTTACAGATTCAACCGGAGTCTCCAACTGCAAGGACTTTCCTTCTATGCTTGCGCTGGATgCTTATATCCAGGTGTGTCGTGGACTGATGATCTCAGCTGTGTGTTTGGGATTTTTTGGAGCCGTTCTGGCACTAGTGGGCATGAAGTGTACCAAAATAGGGGGATCAGAGACCACCAAAGCCAGGATCACCTGTCTATGTGGACTACACTTTATTCTCAGTGGAATCTGCTCTATGACCGCCTGCTCTCTCTATGCACACCGGATAACATCAGAATTCTTTGACCCCTTATTTGTGAAACAGAAATTTGAACTCGGGGCGGCGCTCTTCATTGGCTGGGCAGGATCTGTTCTCAGCATTCTTGGAGGATTTATCTTCTGCTTTTCCATGATGGAGGGATTCAGCATCAGGGAGTACTCCTACAACGGCACCACGTCCTTCATATCCACACGAACCAAGATCACAAAGATGGGCAGAAACCCCGAGACTCCTCAGAAGGACCCTCCAGACCAGAGTTTCTCTGGCAGGCAGTTTGGCAGGAACGCATATGTTTGACTTCAGCTTCTTTAGTGAAGCTGAAAACAATCACAAGTATACACCGTGTAAAGTCACCTATCAAACAAACCCTAGAACGAAGAACATGAGATGGTGTTGCGCGAGGCTGCTTTCATCATCGGAGAAGACTGCACAGAggtaaatgttatatattattaacgTACGTCCTATCTGGGTGAATTCAGAGATTGTTGCCAGAGGTTATTTTGATGAGATATGCCTATAAACAATGTATTGCAGCATAGACCGTTTTGTCAGGAAAACACATAGTGCCTAAGAAACCTCAAGCAAACTTTCCAGGTTGAATGAGATAGAGTTGCCAGATTCGGGACTCGGGCGAACCGATGacagagaggacagagagaacaGCTGCGCTTCATTG

Function

symbol description
cldn10a Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Orthologous to human CLDN10 (claudin 10).

NR:

description
PREDICTED: claudin-10-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242550.1 True 1257 mRNA 0.48 7 3468854 3474093

Neighbor

gene id symbol gene type direction distance location
cldn10e LOC107713114,LOC107660116 coding downstream 2473 3463041 ~ 3466381 (-)
LOC122346405 LOC107678165 coding downstream 8312 3458019 ~ 3460542 (-)
hs6st3a hs6st3a,LOC107713090,LOC107551898,LOC107660115,LOC107581308,LOC107678156 coding downstream 44688 3393593 ~ 3424166 (-)
atg3 atg3,LOC107752093,LOC107551927,LOC107581307,LOC107659953,LOC107678229,LOC107713119 coding downstream 90404 3373272 ~ 3378450 (-)
nhej1 nhej1,LOC107678183,LOC107713118,LOC107659951,LOC107551893 coding downstream 100421 3356451 ~ 3368433 (-)
fkbp11 fkbp11,LOC107581312,LOC107706636,LOC107678175,LOC107659958,LOC107713087,LOC107551896 coding upstream 50796 3524889 ~ 3528105 (-)
ubn2a LOC107678214,LOC107581313,LOC107659962 coding upstream 144150 3618243 ~ 3633182 (-)
ttc26 ttc26,LOC107706703,LOC107678174,LOC107713086 coding upstream 159800 3633893 ~ 3641176 (-)
rpsa rpsa,LOC107581316,LOC107713109,LOC107551921 coding upstream 168840 3642933 ~ 3645898 (-)
LOC122347626 NA coding upstream 170173 3644266 ~ 3644404 (-)
G42080 NA non-coding downstream 178871 3288891 ~ 3289983 (-)
LOC122346399 NA non-coding downstream 282297 3185231 ~ 3186557 (-)
G42042 NA non-coding downstream 427816 3039523 ~ 3041038 (-)
G42044 NA non-coding downstream 433272 3035193 ~ 3035582 (-)
G41961 NA non-coding downstream 612707 2854039 ~ 2856147 (-)
G42254 NA non-coding upstream 16829 3490922 ~ 3491261 (-)
G42235 NA non-coding upstream 61406 3535499 ~ 3538618 (-)
LOC122346554 nfil3-5,LOC107706633,LOC107581326,LOC107678196,LOC107659971,LOC107713076,LOC107706696,LOC107678192,LOC107581323,LOC107659968 non-coding upstream 311806 3785899 ~ 3800450 (-)
G42331 LOC107096619 non-coding upstream 379167 3853260 ~ 3855532 (-)
G42354 NA non-coding upstream 482121 3956214 ~ 3957739 (-)
cep170ab cep170l,LOC107581301,LOC107678228,LOC107672679,LOC107567737,LOC107753897 other downstream 360916 3092540 ~ 3107938 (-)
G41955 LOC107735028,LOC107705557,LOC108430057 other downstream 625596 2840662 ~ 2843258 (-)
G41781 NA other downstream 1761446 1702833 ~ 1707408 (-)
G41443 NA other downstream 3055301 225710 ~ 413553 (-)
cep20 fopnl,LOC107706683,LOC107713084 other upstream 478435 3952528 ~ 3954331 (-)
G42351 NA other upstream 484274 3958367 ~ 3961542 (-)
cdk15 cdk15,LOC107706659,LOC107677597,LOC107660030 other upstream 920314 4394407 ~ 4415213 (-)
nudt15 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 other upstream 1019819 4493912 ~ 4497418 (-)
dnah9l dnah11,LOC107581427,LOC107677540,LOC108430841,LOC108272446,LOC103372266,LOC104955736,LOC107740597,LOC102781332,LOC107384434 other upstream 1235197 4709290 ~ 4738542 (-)

Expression


Co-expression Network