LOC122346399


Basic Information

Item Value
gene id LOC122346399
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 3185231 ~ 3186557 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251127.1
GCCTTAATTGTTGAAAAAGTTGAAGCGAGACTCAAATGGAACCTTAAGTTACTTTATTGATATACATTCCAGATTTCATTTGGAattgttttgtgcattttattatagcatttttcttttattaatccGCCTTCAAAATATAATTGGGTTTTATGATTGACAACATCAACTCTTCCCCGTCATCCACCTATCATATAGAGACCACGACCAGCTAGTGTAGCAAACACTGATGTGTTTGACAGGAGCAAAGGTGAATCACTCTCTTCATGACTTTGATTAAAAGGCCCCAGATGGAAGAAAGAGCAACCgatctcacaaacacacacgatgTCAGTCAAGAAAACAATGAAAGTTCAAGAGCTTGACTGAGGCCTGACCATCAGATTTCTCGGAATAAAGGCAGAGTTATTGCCCAATATTAAAATTTGCTTCAAATAACATGGTGTTATTTTTGCGTTCTATGGTTTCTACTTTCTACACAGACATTACAACACTAATTTACATTCTGTGCATGCTGAcataacctgaaaaaaaaaaccaatgcgGTTGAGCCATTTCCTTCGTTcctttttttgaaaactaaaattgGTACTAATAAGACGGGTCCTTGCTGCTCTTTGCCACAACAAATAAGCAGCAGGTTCAGTCTCCGGTTGAGTAGTTCAAGGTTATTTGTGAACTTGATTTTTAGAAAGCTAAAGGCCTTTGTTAGGTCAGCAAGGAACAATATATCAGCAAACATTTTAGGAAGGGAAAATGCAATGAAGGAAATGGCTCAACCACATTGCAGCACTTTTTTTCATGTTAGTAACATGCAAAAGGATGGAATATTCCCTTTACGTAAAACAGCATCAACATACAGTGTGTTGGATGGAGTTTAGACTGCAGAACTAATATCTGTTACAAATGCTTTAACaacatttgtttattgtttactttGTGTTGTTGCTTCATGCACACATGTCTCAAGTtt

Function

GO: NA

KEGG:

id description
ko04130 SNARE interactions in vesicular transport
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251127.1 True 973 lncRNA 0.36 3 3185231 3186557

Neighbor

gene id symbol gene type direction distance location
pld5 si:ch211-194e18.2,LOC107678171,LOC107752113,LOC107567729,LOC107581384,LOC107753911,LOC107672683 coding downstream 94741 3069702 ~ 3090490 (-)
ccdc88aa ccdc88aa,LOC107752102,LOC107678216,LOC107581383 coding downstream 117029 3048914 ~ 3068202 (-)
mtif2 mtif2,LOC107578070,LOC107581382,LOC107752114 coding downstream 136945 3041472 ~ 3048286 (-)
rtn4a rtn4a,rtn4,LOC107678208,LOC107753895,LOC107672668,LOC107752117 coding downstream 150438 3023385 ~ 3034793 (-)
LOC122347520 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 coding downstream 390119 2792631 ~ 2795112 (-)
si:dkey-261j15.2 LOC107678225,LOC107752101,LOC107581302 coding upstream 10 3186567 ~ 3188418 (-)
ccdc85al ccdc85al,LOC107678233,LOC107551935,LOC107752111,LOC107672684,LOC107581303,LOC107753901 coding upstream 27754 3214311 ~ 3230123 (-)
tuba8l4 LOC107387629,LOC108255233,LOC107551929,LOC107659977,LOC107659949 coding upstream 126458 3313015 ~ 3316279 (-)
bin1b bin1b,LOC107752094,LOC107678198,LOC107659950,LOC107753909 coding upstream 135331 3321888 ~ 3343093 (-)
ihhb ihhb,LOC107752122,LOC107678182,LOC107581432,LOC107713117,LOC107660113,LOC107551900 coding upstream 157345 3343902 ~ 3354986 (-)
G42042 NA non-coding downstream 144193 3039523 ~ 3041038 (-)
G42044 NA non-coding downstream 149649 3035193 ~ 3035582 (-)
G41961 NA non-coding downstream 329084 2854039 ~ 2856147 (-)
G41948 NA non-coding downstream 356523 2828245 ~ 2828708 (-)
G41939 NA non-coding downstream 365640 2818031 ~ 2819591 (-)
G42080 NA non-coding upstream 102334 3288891 ~ 3289983 (-)
G42254 NA non-coding upstream 304365 3490922 ~ 3491261 (-)
G42235 NA non-coding upstream 348942 3535499 ~ 3538618 (-)
LOC122346554 nfil3-5,LOC107706633,LOC107581326,LOC107678196,LOC107659971,LOC107713076,LOC107706696,LOC107678192,LOC107581323,LOC107659968 non-coding upstream 599342 3785899 ~ 3800450 (-)
G42331 LOC107096619 non-coding upstream 666703 3853260 ~ 3855532 (-)
cep170ab cep170l,LOC107581301,LOC107678228,LOC107672679,LOC107567737,LOC107753897 other downstream 77293 3092540 ~ 3107938 (-)
G41955 LOC107735028,LOC107705557,LOC108430057 other downstream 341973 2840662 ~ 2843258 (-)
G41781 NA other downstream 1477823 1702833 ~ 1707408 (-)
G41443 NA other downstream 2771678 225710 ~ 413553 (-)
LOC122346746 plxna1b,plxna1,LOC107582336,LOC102795829 other downstream 2790887 389416 ~ 394344 (-)
cep20 fopnl,LOC107706683,LOC107713084 other upstream 765971 3952528 ~ 3954331 (-)
G42351 NA other upstream 771810 3958367 ~ 3961542 (-)
cdk15 cdk15,LOC107706659,LOC107677597,LOC107660030 other upstream 1207850 4394407 ~ 4415213 (-)
nudt15 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 other upstream 1307355 4493912 ~ 4497418 (-)
dnah9l dnah11,LOC107581427,LOC107677540,LOC108430841,LOC108272446,LOC103372266,LOC104955736,LOC107740597,LOC102781332,LOC107384434 other upstream 1522733 4709290 ~ 4738542 (-)

Expression


Co-expression Network