tuba8l4 (LOC107387629,LOC108255233,LOC107551929,LOC107659977,LOC107659949)


Basic Information

Item Value
gene id tuba8l4
gene name LOC107387629,LOC108255233,LOC107551929,LOC107659977,LOC107659949
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 3313015 ~ 3316279 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242533.1
CCGCTAACTGCCGCTCCCGCCAGAGTGCAGCCAGAGCCCCGCCTCTCCTTCATCCGGTCGCGCGCCGCTATATAAACATAGCCTGACCCCTTCCGCAGCAATCCTGCCTTCATTCTCCGAGCCCTTAACGTCGGTCTGAAGGAAAATCTGACAAAATGCGTGAATGTATTTCCATGCACGTCGGCCAAGCCGGAGCCCAGATgggcaatgcatgctgggagttGTATTGCCTGGAGCATGGGATCCAGCCAGACGGTCAGATGCCCAGTGACAAAACCATCGGAGGCGGCGACGACTCCTTCAACACCTTCTTCAGTGAGACTGGTGCTGGAAAACATGTCCCAAGAGCAGTATTTGTCGATCTGGAGCCCACTGTCATTGATGAGGTGCGCACCGGTACTTATCGCCAGCTGTTCCACCCTGAGCAGTTAATCACCGGTAAGGAAGATGCTGCTAACAACTATGCCCGTGGTCACTACACCATTGGCAAGGAGATCATTGATCTGGTGCTGGACAGGACTCGCAAGCTGGCTGATCAGTGCACTGGACTCCAGGGCTTCCTGATCTTCCACAGTTTTGGTGGAGGCACTGGCTCTGGGTTCACCTCCCTCCTAATGGAAAGGCTCTCTGTTGACTACGGAAAGAAGTCAAAACTTGAGTTTGCTGTCTATCCAGCTCCTCAAGTGTCCACTGCGGTGGTGGAGCCCTACAACTCCATCCTCACCACCCACACCACCCTTGAGCACTCCGACTGTGCCTTCATGGTGGACAACGAGGCCATCTACGATATCTGCCGTAGAAACCTTGACATCGAGCGTCCCACCTACACAAACCTCAACAGGCTGATCGGGCAGATCGTTTCCTCCATCACAGCATCCCTGCGTTTCGACGGAGCCCTGAATGTAGATCTGACCGAGTTCCAAACCAACCTGGTGCCATATCCGCGTATCCACTTCCCTCTGGCCACCTACGCTCCAGTGATCTCCGCAGAAAAAGCCTACCATGAGCAGTTGTCTGTTGCTGACATCACCAACGCTTGCTTCgaaccagccaatcagatggtGAAGTGCGACCCTCGTCACGGCAAGTACATGGCCTGCTGTCTGCTGTACCGTGGAGATGTGGTGCCCAAAGACGTCAACTCTGCCATCGCCACCATCAAGACCAAGCGTAGCATCCAGTTTGTGGACTGGTGTCCCACTGGTTTCAAGGTTGGCATCAACTACCAGCCCCCAACCGTGGTTCCTGGAGGAGACCTGGCGAAGGTGCAGCGAGCTGTATGTATGCTGAGCAACACCACAGCCATCGCTGAAGCCTGGGCTCGTCTGGATCACAAGTTCGATCTGATGTATGCCAAGAGAGCTTTCGTTCATTGGTATGTGGGTGAAGGAATGGAAGAAGGTGAGTTCTCAGAGGCCAGAGAAGACATGGCTGCCCTGGAGAAGGATTACGAAGAGGTGGGAACAGACAGCGTTGgagaagaggatgaagaaggAGAGGAGTATTAAATTTGAGGGCTTGCTGACCCTTGCACAACGAAGCAAGATAACTCATGCCCGACTTAAATATGGAAAATGTTCTGTTATAAACCTACATTccatcaaataaaatttttcctttttattggGTCAaccttttcaataaaaatgctaaataaatctgccaaaaa

Function

NR:

description
PREDICTED: tubulin alpha chain-like

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242533.1 True 1669 mRNA 0.52 4 3313015 3316279

Neighbor

gene id symbol gene type direction distance location
ccdc85al ccdc85al,LOC107678233,LOC107551935,LOC107752111,LOC107672684,LOC107581303,LOC107753901 coding downstream 82892 3214311 ~ 3230123 (-)
si:dkey-261j15.2 LOC107678225,LOC107752101,LOC107581302 coding downstream 124597 3186567 ~ 3188418 (-)
pld5 si:ch211-194e18.2,LOC107678171,LOC107752113,LOC107567729,LOC107581384,LOC107753911,LOC107672683 coding downstream 222525 3069702 ~ 3090490 (-)
ccdc88aa ccdc88aa,LOC107752102,LOC107678216,LOC107581383 coding downstream 244813 3048914 ~ 3068202 (-)
mtif2 mtif2,LOC107578070,LOC107581382,LOC107752114 coding downstream 264729 3041472 ~ 3048286 (-)
bin1b bin1b,LOC107752094,LOC107678198,LOC107659950,LOC107753909 coding upstream 5609 3321888 ~ 3343093 (-)
ihhb ihhb,LOC107752122,LOC107678182,LOC107581432,LOC107713117,LOC107660113,LOC107551900 coding upstream 27623 3343902 ~ 3354986 (-)
nhej1 nhej1,LOC107678183,LOC107713118,LOC107659951,LOC107551893 coding upstream 40172 3356451 ~ 3368433 (-)
atg3 atg3,LOC107752093,LOC107551927,LOC107581307,LOC107659953,LOC107678229,LOC107713119 coding upstream 56993 3373272 ~ 3378450 (-)
hs6st3a hs6st3a,LOC107713090,LOC107551898,LOC107660115,LOC107581308,LOC107678156 coding upstream 77314 3393593 ~ 3424166 (-)
G42080 NA non-coding downstream 23032 3288891 ~ 3289983 (-)
LOC122346399 NA non-coding downstream 126458 3185231 ~ 3186557 (-)
G42042 NA non-coding downstream 271977 3039523 ~ 3041038 (-)
G42044 NA non-coding downstream 277433 3035193 ~ 3035582 (-)
G41961 NA non-coding downstream 456868 2854039 ~ 2856147 (-)
G42254 NA non-coding upstream 174643 3490922 ~ 3491261 (-)
G42235 NA non-coding upstream 219220 3535499 ~ 3538618 (-)
LOC122346554 nfil3-5,LOC107706633,LOC107581326,LOC107678196,LOC107659971,LOC107713076,LOC107706696,LOC107678192,LOC107581323,LOC107659968 non-coding upstream 469620 3785899 ~ 3800450 (-)
G42331 LOC107096619 non-coding upstream 536981 3853260 ~ 3855532 (-)
G42354 NA non-coding upstream 639935 3956214 ~ 3957739 (-)
cep170ab cep170l,LOC107581301,LOC107678228,LOC107672679,LOC107567737,LOC107753897 other downstream 205077 3092540 ~ 3107938 (-)
G41955 LOC107735028,LOC107705557,LOC108430057 other downstream 469757 2840662 ~ 2843258 (-)
G41781 NA other downstream 1605607 1702833 ~ 1707408 (-)
G41443 NA other downstream 2899462 225710 ~ 413553 (-)
cep20 fopnl,LOC107706683,LOC107713084 other upstream 636249 3952528 ~ 3954331 (-)
G42351 NA other upstream 642088 3958367 ~ 3961542 (-)
cdk15 cdk15,LOC107706659,LOC107677597,LOC107660030 other upstream 1078128 4394407 ~ 4415213 (-)
nudt15 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 other upstream 1177633 4493912 ~ 4497418 (-)
dnah9l dnah11,LOC107581427,LOC107677540,LOC108430841,LOC108272446,LOC103372266,LOC104955736,LOC107740597,LOC102781332,LOC107384434 other upstream 1393011 4709290 ~ 4738542 (-)

Expression


Co-expression Network