unc50 (unc50,LOC107686789,LOC107746628,LOC107672653)


Basic Information

Item Value
gene id unc50
gene name unc50,LOC107686789,LOC107746628,LOC107672653
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 1765156 ~ 1768100 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241061.1
GTGGCGTCGCTGAACCGGGTACGCTGCTACGTGTTCGGACGAGGCAGGAAGTTGACATGTCACGGTTGTTGCCTTGTTTTCTACACGCTGATTAAAAAGAGCTTTTCTTCATTAGTTGCCGATACTGCTGTGGAGCAGCATGTTGCCGACGAGTTCCCCGCAGATCCAGCGGAACGGCAGCCTGAACGCTCGGGATGCAGCGCGGCACACGGCCGGAGCCAAGCGCTACAAATACCTGCGGCGACTCCTGCATTTCAGACAGATGGATTTTGAGTTTGCCATGTGGCAGATGCTCTACCTGTTCACATCGCCGCAGAAAGTGTACCGCAACTTCCACTACCGCAAACAGACCAAAGACCAGTGGGCCCGGGACGACCCTGCGTTCCTGGTGCTGCTCAGCATCTGGCTGTGCGTGTCGACTGTGGGCTTCGGTCTGGTCCTGGAAATGGGTTTTGTGGAGACGTTGAAGCTGTTGCTGTGGGTGGTTTTCATCGATTGTATCGGAGTCGGATTGCTCATATCTACACTCATGTGGTTTGTCACAAACAAATATCTACTGAAACACCCTAGCAGAGATTACGACGTGGAGTGGGGCTACGCGTTTGACGTCCATCTGAACGCCTTCTACCCTCTCCTGGTCATTCTGCACTTTCTGCAGCTATTCTTCATCAACCATGTGGTGGTTATAAGTTCAGACTGGTTCCTGGGTTATTTTGTGGGAAACACCTTGTGGCTTATTGCCATCGGTTACTATGTTTACATCACATTCCTGGGCTACAGTGCACTTCCATTTTTAAAGAACACTGTGGTGCTTCTGTATCCCTTTGCTTTGCTCGGACTCCTGTATGTTCTCTCCATTTCACTTGGCTGGAACTTCACTAAAGGTCTCTGCTGGTTTTACAAGCAAAGGGTCCAATAAAGGACAGCAGAACACATGAAGGACATTGCTTCAGAGCGCATGTGCTCTTAAAGACGGAAGGAAAGCGTGTTGTCGCTCTTGGGacttcatgattttttttttgtataatctgtaaatattagTTTGGTTGTAGAGGAAAAGAGTTTCAATTGTTTATGGTGTCATGacccttttctttttcttaatttGATACTCGGCCTTCATTTAATGTCGTGGTGTGgttttgaaaaatgcaaatgtgcgGAAAAGTGCATAAAATATCTGCTAGGACGCTGCACTTTTTACTTGCGAAAACGTGtacaataaagatatttttaaagaaa

Function

symbol description
unc50 Predicted to enable RNA binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and nuclear inner membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Orthologous to human UNC50 (unc-50 inner nuclear membrane RNA binding protein).

NR:

description
PREDICTED: protein unc-50 homolog

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0005637 nuclear inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241061.1 True 1242 mRNA 0.47 6 1765156 1768100

Neighbor

gene id symbol gene type direction distance location
slc25a12 slc25a12,LOC107686753,LOC107582326,LOC107709078,LOC107557141 coding downstream 626 1755301 ~ 1764530 (-)
tlk1b tlk1b,LOC107557139,LOC107746598,LOC107709077,LOC107686756 coding downstream 33725 1716729 ~ 1731431 (-)
dmbx1b dmbx1,dmbx1b,LOC107672661,LOC107554873,LOC107746634 coding downstream 198691 1560827 ~ 1566465 (-)
LOC122346936 uqcrh,LOC107672656,LOC106613551 coding downstream 221129 1542306 ~ 1544027 (-)
lrrc41 lrrc41,LOC107746605,LOC107722283 coding downstream 222990 1536450 ~ 1542166 (-)
trak2 LOC107746594,LOC107582328,LOC107686751,LOC107672648 coding upstream 70900 1839000 ~ 1859344 (-)
LOC122346433 LOC107718079,LOC107589806,LOC107722642 coding upstream 937433 2705533 ~ 2726242 (-)
LOC122347517 itm2ba,LOC107677554,LOC107584788,LOC107660034,LOC107705560,LOC107581357 coding upstream 1018360 2786460 ~ 2792735 (-)
LOC122347520 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 coding upstream 1024531 2792631 ~ 2795112 (-)
rtn4a rtn4a,rtn4,LOC107678208,LOC107753895,LOC107672668,LOC107752117 coding upstream 1255285 3023385 ~ 3034793 (-)
G41789 NA non-coding downstream 27908 1736275 ~ 1737248 (-)
LOC122347396 NA non-coding downstream 48815 1635103 ~ 1716341 (-)
G41784 gorasp2,LOC107709057,LOC107746599 non-coding downstream 53616 1711110 ~ 1711540 (-)
G41774 NA non-coding downstream 71807 1687120 ~ 1693349 (-)
G41757 NA non-coding downstream 125089 1588063 ~ 1640067 (-)
G41856 NA non-coding upstream 152112 1920212 ~ 1921260 (-)
G41822 NA non-coding upstream 153421 1921521 ~ 1928256 (-)
G41825 NA non-coding upstream 161577 1929677 ~ 1929853 (-)
LOC122346779 NA non-coding upstream 174328 1942428 ~ 2028910 (-)
G41905 NA non-coding upstream 794329 2562429 ~ 2562641 (-)
G41781 NA other downstream 57748 1702833 ~ 1707408 (-)
G41443 NA other downstream 1351603 225710 ~ 413553 (-)
LOC122346746 plxna1b,plxna1,LOC107582336,LOC102795829 other downstream 1370812 389416 ~ 394344 (-)
LOC122346743 dlgap1a,dlgap1,LOC107686064,LOC107550721,LOC107584464,LOC107752864,LOC107690825,LOC107554879,LOC107582307,LOC107705865 other downstream 1586023 158596 ~ 179133 (-)
G41955 LOC107735028,LOC107705557,LOC108430057 other upstream 1072562 2840662 ~ 2843258 (-)
cep170ab cep170l,LOC107581301,LOC107678228,LOC107672679,LOC107567737,LOC107753897 other upstream 1324440 3092540 ~ 3107938 (-)
cep20 fopnl,LOC107706683,LOC107713084 other upstream 2184428 3952528 ~ 3954331 (-)
G42351 NA other upstream 2190267 3958367 ~ 3961542 (-)
cdk15 cdk15,LOC107706659,LOC107677597,LOC107660030 other upstream 2626307 4394407 ~ 4415213 (-)

Expression


Co-expression Network