LOC122347396


Basic Information

Item Value
gene id LOC122347396
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 1635103 ~ 1716341 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU61775
ttttttggTGTTATTGGTTTATTGGAATGCACCacggaaaaaaatatttttgaaaattgtttaaaaatatctgtttttgcaaaagaactctttatatatgcacacataataacacacaaacaaaatatatgctgatgtaaattatattttttcattttatataaatgtataaatctattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtacatacatgcatacatgtgaattttagacatttgttttctgtaataGTTTAACAGTCATGAAAATTGTTTTATCACCCCCCGGCACACACACGTTCTGTAAGGGAAttgaaaaaagtgtgtgtgtgtctgcttttaaaggtatttttctttatatcagCATGAGTTCAAGGCAATATAACGCATACAGTGTGtgtagaatgtatttttttcatattacagTGAGTAATTTTctcttaaataaaatagttcttttatttctttcgaTTTTGGAGTGGAAAGTGACCTGGACATGTTGTTGACCAGTTTTATGAGATTCACCTGTTTGTCCTGCATGTAGGAGGAGAACCCGTAAAATCATCTCAGTAGAATAGACCTCCTATAGCAGCTCTCAAAGATCACATACGAGTACATTAATAATCCAGCCTGTGCAGGGTTTCATATTTTCTCAGTTTGTCTGTGACTTCTGTTGTCTGATGCAGCATGAAGTTGCATTTAGTTTCACGATTTACTCAGAATATGATCCAGACCAAATATGAATTTGAATTACCAGGAAACGGCATGAATAAACCTCCATTGTGGTTGTgaatgaggtgtgtgtgtgtgtgatgcgaGCGATGATTGACAGAACAGACGGAAGGTGGGCCGGACCCCGCCCTTGATCATTAACCCCTTTATGACCAGACCCAGTGCTGTCATGTTGCTTAGCAACCCTCGCTGATCCCGGAGCCTGAGTCAGGCCAGCATCTCCGAATGACACGGACCGGACCGCGATTGAACGCTCGAAGCTTCCAGAGTCTGTTTTCAGGGGACGATTTTCAGCTTTTGTTGTTTCCTCTCTCTAAATACCCTTTCAACCCCAGAAGCAGTTTTCAGCTCAACATATGGTGATCTGTCTCCAAGTGCTGCTGCAATTGTAGAGAATGTAGCcaaaagagaaataaacatttttgaaaataaaaaaaaaaaaaaaaaaaa
>TU61776
tttttttacttttccaaaaactagtttttttatgttataattttttggTGTTATTGGTTTATTGGAATGCACCacggaaaaaaatatttttgaaaattgtttaaaaatatctgtttttgcaaaagaactctttatatatgcacacataataacacacaaacaaaatatatgctgatgtaaattatattttttcattttatataaatgtataaatctattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtacatacatgcatacatgtgaattttagacatttgttttctgtaataGTTTAACAGTCATGAAAATTGTTTTATCACCCCCCGGCACACACACGTTCTGTAAGGGAAttgaaaaaagtgtgtgtgtgtctgcttttaaaggtatttttctttatatcagCATGAGTTCAAGGCAATATAACGCATACAGTGTGtgtagaatgtatttttttcatattacagTGAGTAATTTTctcttaaataaaatagttcttttatttctttcgaTTTTGGAGTGGAAAGTGACCTGGACATGTTGTTGACCAGTTTTATGAGATTCACCTGTTTGTCCTGCATGTAGGAGGAGAACCCGTAAAATCATCTCAGTAGAATAGACCTCCTATAGCAGCTCTCAAAGATCACATACGAGTACATTAATAATCCAGCCTGTGCAGGGTTTCATATTTTCTCAGTTTGTCTGTGACTTCTGTTGTCTGATGCAGCATGAAGTTGCATTTAGTTTCACGATTTACTCAGAATATGATCCAGACCAAATATGAATTTGAATTACCAGGAAACGGCATGAATAAACCTCCATTGTGGTTGTgaatgaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgcatcGAGTGACACGCCC
>XR_006251217.1
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgcgaGCGATGATTGACAGAACAGACGGAAGGTGGGCCGGACCCCGCCCTTGATCATTAACCCCTTTATGACCAGACCCAGTGCTGTCATGTTGCTTAGCAACCCTCGCTGATCCCGGAGCCTGAGTCAGGCCAGCATCTCCGAATGACACGGACCGGACCGCGATTGAACGCTCGAAGCTTCCAGAGTCTGTTTTCAGGGGACGATTTTCAGCTTTTGTTGTTTCCTCTCTCTAAATACCCTTTCAACCCCAGAAGCAGTTTTCAGCTCAACATATGGTGATCTGTCTCCAAGTGCTGCTGCAATTGTAGAGAATGTAGCcaaaagagaaataaacatttttgaaaata
>XR_006251218.1
ttgtgtgtgtgtgtgtgtgtgtgtgtgtgatgcgaGCGATGATTGACAGAACAGACGGAAGGTGGGCCGGACCCCGCCCTTGATCATTAACCCCTTTATGACCAGACCCAGTGCTGTCATGTTGCTTAGCAACCCTCGCTGATCCCGGAGCCTGAGTCAGGCCAGCATCTCCGAATGACACGGACCGGACCGCGATTGAACGCTCGAAGCTTCCAGAGTCTGTTTTCAGGGGACGATTTTCAGCTTTTGTTGTTTCCTCTCTCTAAATACCCTTTCAACCCCAGAAGCAGTTTTCAGCTCAACATATGGTGATCTGTCTCCAAGTGCTGCTGCAATTGTAGAGAATGTAGCcaaaagagaaataaacatttttgaaaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61775 True 1191 lncRNA 0.38 2 1635103 1716301
TU61776 False 902 lncRNA 0.34 2 1666108 1716341
XR_006251217.1 False 383 lncRNA 0.49 2 1715130 1716123
XR_006251218.1 False 380 lncRNA 0.49 2 1715130 1716124

Neighbor

gene id symbol gene type direction distance location
dmbx1b dmbx1,dmbx1b,LOC107672661,LOC107554873,LOC107746634 coding downstream 68638 1560827 ~ 1566465 (-)
LOC122346936 uqcrh,LOC107672656,LOC106613551 coding downstream 91076 1542306 ~ 1544027 (-)
lrrc41 lrrc41,LOC107746605,LOC107722283 coding downstream 92937 1536450 ~ 1542166 (-)
hyi hyi coding downstream 688790 940290 ~ 946313 (-)
med8 med8,LOC107708572,LOC107554872,LOC107690829 coding downstream 777629 855707 ~ 857474 (-)
tlk1b tlk1b,LOC107557139,LOC107746598,LOC107709077,LOC107686756 coding upstream 388 1716729 ~ 1731431 (-)
slc25a12 slc25a12,LOC107686753,LOC107582326,LOC107709078,LOC107557141 coding upstream 38960 1755301 ~ 1764530 (-)
unc50 unc50,LOC107686789,LOC107746628,LOC107672653 coding upstream 48815 1765156 ~ 1768100 (-)
trak2 LOC107746594,LOC107582328,LOC107686751,LOC107672648 coding upstream 122659 1839000 ~ 1859344 (-)
LOC122346433 LOC107718079,LOC107589806,LOC107722642 coding upstream 989192 2705533 ~ 2726242 (-)
G41754 NA non-coding downstream 75079 1559719 ~ 1560024 (-)
G41617 LOC108280478,LOC107098440 non-coding downstream 196974 1434973 ~ 1438129 (-)
G41615 NA non-coding downstream 203169 1425568 ~ 1431934 (-)
G41587 NA non-coding downstream 529570 1104999 ~ 1105533 (-)
G41583 NA non-coding downstream 550926 1083798 ~ 1084177 (-)
G41789 NA non-coding upstream 19934 1736275 ~ 1737248 (-)
G41856 NA non-coding upstream 203871 1920212 ~ 1921260 (-)
G41822 NA non-coding upstream 205180 1921521 ~ 1928256 (-)
G41825 NA non-coding upstream 213336 1929677 ~ 1929853 (-)
LOC122346779 NA non-coding upstream 226087 1942428 ~ 2028910 (-)
G41443 NA other downstream 1221550 225710 ~ 413553 (-)
LOC122346746 plxna1b,plxna1,LOC107582336,LOC102795829 other downstream 1240759 389416 ~ 394344 (-)
LOC122346743 dlgap1a,dlgap1,LOC107686064,LOC107550721,LOC107584464,LOC107752864,LOC107690825,LOC107554879,LOC107582307,LOC107705865 other downstream 1455970 158596 ~ 179133 (-)
G41955 LOC107735028,LOC107705557,LOC108430057 other upstream 1124321 2840662 ~ 2843258 (-)
cep170ab cep170l,LOC107581301,LOC107678228,LOC107672679,LOC107567737,LOC107753897 other upstream 1376199 3092540 ~ 3107938 (-)
cep20 fopnl,LOC107706683,LOC107713084 other upstream 2236187 3952528 ~ 3954331 (-)
G42351 NA other upstream 2242026 3958367 ~ 3961542 (-)
cdk15 cdk15,LOC107706659,LOC107677597,LOC107660030 other upstream 2678066 4394407 ~ 4415213 (-)

Expression


Co-expression Network