G41617 (LOC108280478,LOC107098440)


Basic Information

Item Value
gene id G41617
gene name LOC108280478,LOC107098440
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 1434973 ~ 1438129 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU61566
GTGAAGAGCAGCATTTACTGTTAACCGAGACACTGAATCACGTCAGACGACATGTTTCTATAATTAATTCACAGCCTTTGAAATCCATAGTTTAGGCCGGAAGATCTCTCTGATACTGGTCTGTATGGATTTGTACAAATATAAACGCTGGGAATGTTACTGGTGGAATAATGCCTTAACCCTTGACTCAAAGCCACTGTAGTGTGAGCGTTTATCTGTGTGCATCTGTGATGGATTGAGCTCTTCATGGAGACCGGTCTCCTCATGACGGGTAATCCTTTTATTTGTGCGCTGAACTGTGTGCATCACCTGTCAGCTCGGGGCCGCGGGGCCGCGCCGATTCCCCAGTGCTGATAGCACTCTAGTTATGGACAGTCCTGCCAATAAGAACAATTTGTCCTGACAACTAGCAGCACAAAGGCAGTAGACATGCAGACGCAGACTTCCGAGACGGGCCATGACTCTGAGCTGTCACATCCAGCAGGAGTCAAAGAGACGGGGGACAGTGACGGAGCAGCACCTCTTTAGAAGAACACGCCATCTTTCATTCGATTTCTCCAGAGCCACGTTCACAGTTGGTCTCAATTGGTTCTCAGATCTCCGTTTATGACTTCAGGCAAAATTCTGAGTTTAAGATCCGGCTCCCTTTCACTTCAAGAGCGAGTTTAGATTGAGTTAGCCGCGCCGCAGGACGTTAAATCGAAACGACAGGAAGTGGAATTTACTGAATTGCATTTGCGAGCCTCGATTTACATACCTGTATCCGTCGATGAAGCTGGCGTTAATGTAGTCGGAGCCTTCCacgcctctgattggctgcagaCACACACGGCTGGACTCGAAGGGCATGATGTTGACCAGTCGGTTCTTGAATTTGTTGCACGGCAGACTAGCGCTGATGAATCTGGAGGTGTGTGCTTTAGAGTTGGCCAGTTCTTAAACTCCAGTTCCATGGCGGTGACGGTGTCCCCGGGCGACACCTGCGTGAGTTTCTGGATGTGTGTGTACAGGCTCCGCGCAGGGACCTCGGTGTTCCCGCAGGTGGCGGCCTCCAGCAGGGCCTCGTGGATGAAGATATACTGATCTTCCGTCTGCACCATGTAGTTCCTCTGAGCGCGCATGCAGGTCACGTGACCGTAGATATCCACCGACTTCTCGTGCTTCATCCGCTCCAGCATGGCCTCTATGACGATAAAACAGCCTGTCCGACCCACACCGGCG

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase F isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61566 True 1221 lncRNA 0.51 2 1434973 1438129

Neighbor

gene id symbol gene type direction distance location
hyi hyi coding downstream 488660 940290 ~ 946313 (-)
med8 med8,LOC107708572,LOC107554872,LOC107690829 coding downstream 577499 855707 ~ 857474 (-)
prkag1 prkag1,LOC107582314,LOC107686771,LOC107554882,LOC107752861,LOC107708574 coding downstream 726849 701734 ~ 708124 (-)
pxmp4 pxmp4,LOC103464829 coding downstream 752049 679806 ~ 682924 (-)
LOC122347422 LOC107690823,LOC107554861 coding downstream 757030 670741 ~ 677943 (-)
lrrc41 lrrc41,LOC107746605,LOC107722283 coding upstream 98321 1536450 ~ 1542166 (-)
LOC122346936 uqcrh,LOC107672656,LOC106613551 coding upstream 104177 1542306 ~ 1544027 (-)
dmbx1b dmbx1,dmbx1b,LOC107672661,LOC107554873,LOC107746634 coding upstream 122698 1560827 ~ 1566465 (-)
tlk1b tlk1b,LOC107557139,LOC107746598,LOC107709077,LOC107686756 coding upstream 278600 1716729 ~ 1731431 (-)
slc25a12 slc25a12,LOC107686753,LOC107582326,LOC107709078,LOC107557141 coding upstream 317172 1755301 ~ 1764530 (-)
G41615 NA non-coding downstream 3039 1425568 ~ 1431934 (-)
G41587 NA non-coding downstream 329440 1104999 ~ 1105533 (-)
G41583 NA non-coding downstream 350796 1083798 ~ 1084177 (-)
G41582 NA non-coding downstream 351825 1082759 ~ 1083148 (-)
G41580 NA non-coding downstream 409221 1025002 ~ 1025752 (-)
G41754 NA non-coding upstream 121590 1559719 ~ 1560024 (-)
G41757 NA non-coding upstream 149934 1588063 ~ 1640067 (-)
LOC122347396 NA non-coding upstream 196974 1635103 ~ 1716341 (-)
G41774 NA non-coding upstream 248991 1687120 ~ 1693349 (-)
G41784 gorasp2,LOC107709057,LOC107746599 non-coding upstream 272981 1711110 ~ 1711540 (-)
G41443 NA other downstream 1021420 225710 ~ 413553 (-)
LOC122346746 plxna1b,plxna1,LOC107582336,LOC102795829 other downstream 1040629 389416 ~ 394344 (-)
LOC122346743 dlgap1a,dlgap1,LOC107686064,LOC107550721,LOC107584464,LOC107752864,LOC107690825,LOC107554879,LOC107582307,LOC107705865 other downstream 1255840 158596 ~ 179133 (-)
G41781 NA other upstream 264704 1702833 ~ 1707408 (-)
G41955 LOC107735028,LOC107705557,LOC108430057 other upstream 1402533 2840662 ~ 2843258 (-)
cep170ab cep170l,LOC107581301,LOC107678228,LOC107672679,LOC107567737,LOC107753897 other upstream 1654411 3092540 ~ 3107938 (-)
cep20 fopnl,LOC107706683,LOC107713084 other upstream 2514399 3952528 ~ 3954331 (-)
G42351 NA other upstream 2520238 3958367 ~ 3961542 (-)

Expression


Co-expression Network