RNA id: XM_043241691.1


Basic Information

Item Value
RNA id XM_043241691.1
length 2100
RNA type mRNA
GC content 0.44
exon number 7
gene id rtn4a
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 3023385 ~ 3034793 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTCTAGTCAAACAGTTGCGCTGTTTCTGCGTTTAAGGCCCGCATTGAACCTAACGCACACTCGGTGGTGCGTTGGTGAAGTTTTGAAAAGCTATTTTCTCAGACGTTCAAATCGAAAAAGACTCAGTTTTTGAAAAGCTTACTCTTATATAACCGTGTAAAATTATTCTTCACAATGGATGATGACATAAGCTCCACGACCCCATCGTATGGCTTTCAGCAtgatgaagaagaagacgaATACAGAGCAGACAAACACAAGAACTCGTTGATGGACGAAGGAGCTGATTTCTTGCCGAGAGAGGCAGAAGCTAATGTTCTAGACGTCGATGATATCTTAGATCTGGCTGGAGGAGCGAAAGATGCGCTGGAGAGGCACAGGTCCACATTGCCACGTACCGAAGAGCCTCTGCTGGACTTTACAGATCCAGAACCGGAACCATCATCCACCTTTAAACCAGAGCCAGAAGCTGTCAAACCCTCGCCCATCCGTGCGTTTGAAGACGCAACAACAAAACCGacgaaatcagaagaaaaagaTGAGAAAACAACAGTCACGCCATCCAAATCTACCTGTTGTTGTTCGtTGGTGGACCTGCTGTATTGGCGAGATCTGCAGAGGACGGGGGTGGTGTTTGGAGCCAGTCTGCTCCTGCTGCTGTCCCTCAGCGTGTGCAGTATTATCAGCGTGATCTCCTACATGGCCCTTGCCCTGCTGTCTGTCACCATCTCCTTCAGGATATACAAAGGCATTTTACAGGCTGTTCAGAAGTCAGAGGATGGACACCCCTTCAAGATGTATCTGGATAAGGATATCGGGATCTCTTCAGAGTTGGTTCATAAGTACAGCGACACGGCTCTGGGGCACATCAACTGCGTGATTAAGGAGCTGCGACGACTCTTCCTGGTGGAGGATCTGGTGGACTCACTCAAGTTTGCAGTTCTCATGTGGATCCTGACCTATGTTGGTGCCTTGTTCAATGGTCTGACCGTTCTTATTTTGGGTCTCATAGGTGCATTCAGTTGGCCAGTGATCTATGAAAAGTATCAGGCACAAATTGACCATTACTATGGACTGGTGAACAAGCAAGTCAAAGATGTTGTGGCCAAGATCCAGGCGAAGATTCCCGGAGCAAAGCCAAAGACCGAGTGAAGAAAGTTAGCTAGTGTGTTATTTCCTTGCACGAGAAGTGATGGTGGAACAAGCGAAGACGGACAGAATCGTGTTTGGTTTGGAAAAAGGCCTTAGACGATGCAATGTAAACTTTACCCCCCCCCCCCCAAGTGTTTGAATCGATAGCGTAACTGAGAATGAAATCTTTAAACCTCTTATCAGTTTCTCTCACAAGCAGAGTCAACACTGTCTTTCACAGTAGATCTAGTTCTCCATGTTTAAAGTATAAACGCAGCTACGTAACACCATTACAGAATGTAGTCTGAGGAACTGATGTCGGCAAAAGCAGGAATCGATGAGGTTTTTTTCGTTTACCGTTCGGTCAGTGAAGCGTTCACCTTGTTCGAAGGccattttgattcatttcagtaTGATAAAGGGAGTGAATTGTTTTGGTAACGAAGTTCCTTCACAACGAGTCTTtgtttttagctatttttttccctttttgtttGTACTTGGCGTGCTAGAACACAGTGGTGTTGTGGTGTAACTGTGTTAAAATTTATGCAATTCAATCGTGTTAGAGGTGAAGAGGCTTCTAGTCTTCTGTAGCAGAGTTTAAGAGCAGTTTTATTTCGCACTTGTCTTCAAAGGGATCTGTTACAGCATATTGCACCCAactattcattgtttttgtttctttttttttttttttagcaaactaGAACGTATGCTGTGCTGGCCTATCACCTTCTGTCATGTCAAAATCAACAACATGTTTGCAGAATTTGCCGTCAACATCGTGGATCGAATACCTGAAACGGCACACGCTCTTAAAAACCCGCAAACTTCAAGCACTGTTTCTTCATGCAGGTCATTTGTAAATGATAATTCAGTTTTGATGAAAATATGCTGAAGACTGTCTGTGAAATGCATTGTGAAAATAAGCCAATAAAGTACCAATAAAGCTTGTAGACAAACTA

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20720 RTN4; reticulon-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62020 lncRNA downstream 167238 2854039 ~ 2856147 (-) True G41961
TU62005 lncRNA downstream 194677 2828245 ~ 2828708 (-) True G41948
TU61995 lncRNA downstream 203794 2818031 ~ 2819591 (-) True G41939
TU61977 lncRNA downstream 250022 2771288 ~ 2773363 (-) True G41921
TU61948 lncRNA downstream 460744 2562429 ~ 2562641 (-) True G41905
TU62127 lncRNA upstream 400 3035193 ~ 3035582 (-) True G42044
TU62124 lncRNA upstream 4730 3039523 ~ 3041038 (-) True G42042
TU62122 lncRNA upstream 5552 3040345 ~ 3041038 (-) False G42042
XR_006251127.1 lncRNA upstream 150438 3185231 ~ 3186557 (-) True LOC122346399
TU62204 lncRNA upstream 254098 3288891 ~ 3289983 (-) True G42080
XM_043242880.1 mRNA downstream 228273 2792631 ~ 2795112 (-) True LOC122347520
XM_043242875.1 mRNA downstream 230650 2786460 ~ 2792735 (-) True LOC122347517
XM_043241045.1 mRNA downstream 297143 2705533 ~ 2726242 (-) True LOC122346433
XM_043241497.1 mRNA downstream 1164041 1839000 ~ 1859344 (-) True trak2
XM_043241061.1 mRNA downstream 1255285 1765156 ~ 1768100 (-) True unc50
XM_043242558.1 mRNA upstream 6679 3041472 ~ 3048286 (-) True mtif2
XM_043242559.1 mRNA upstream 6679 3041472 ~ 3046396 (-) False mtif2
XM_043242948.1 mRNA upstream 14121 3048914 ~ 3068202 (-) False ccdc88aa
XM_043242946.1 mRNA upstream 14121 3048914 ~ 3068202 (-) False ccdc88aa
XM_043242947.1 mRNA upstream 14121 3048914 ~ 3068202 (-) False ccdc88aa
TU62012 other downstream 180127 2840662 ~ 2843258 (-) True G41955
TU61792 other downstream 1315977 1702833 ~ 1707408 (-) True G41781
TU61311 other downstream 2609832 225710 ~ 413553 (-) True G41443
TU61336 other downstream 2848190 173968 ~ 175195 (-) False LOC122346743
TU61334 other downstream 2859328 163323 ~ 164057 (-) False LOC122346743
XR_006251230.1 other upstream 57747 3092540 ~ 3107897 (-) False cep170ab
XR_006251231.1 other upstream 59997 3094790 ~ 3107897 (-) False cep170ab
XR_006251245.1 other upstream 609473 3644266 ~ 3644404 (-) True LOC122347626
TU62651 other upstream 917755 3952548 ~ 3954278 (-) False cep20
TU62650 other upstream 923574 3958367 ~ 3961542 (-) True G42351

Expression Profile