G42644 (LOC101169590,LOC106917580,LOC108430882)


Basic Information

Item Value
gene id G42644
gene name LOC101169590,LOC106917580,LOC108430882
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 4698903 ~ 4704503 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU63111
CTTGGCATTCTCATCACGCAGATTAAACGTGAGCTCCAGATTGGACAGGAAGTAGTCTGAGAATTCAGGATACATTTCCAGAACCTCCAGAAGATCTTCCCTGTAGATGGTGTGAAGGTCGCAGTAGCTCAGCGCTCGAACATCTGCGTTGGCTTTCCCCGGTTTAGCGTACAGATGAATCATCTCTCCAAAAATATCATTCTTACCTGAGAGGTGGGCGTACAGTGATCACAAGAGCAGAGAGGGAAGAGAAGATAAACCAATGAAGGAAGAAAAAGGACAAATAGATGGGAGAAAGTAAGTTCCCATAGTAGTATAAGTATGTAAGTGAAATATCACAGGCAGTTATAGTAGTGATGTATGAAGCAAAGCTAACACAGAAATCACTATCAAACCAAACAGATTTCTTAAAACCACTGCAAGCTCTGTGGGTTACTCTTTCACCATCATGTGAAATTCCTAATTGTTCGGATTCTTGGGGCCATATTCAAGAAAAATCTCCTTGTAAATAAATTTTCCTCCTAAAATTAAAGGACAGATGCTAGTAAAGAAAAAGGTAatcatttctgggtgaattattcctttaaccCTTAAAAGAGGTCTTAAGGTCCGAAATTCATAGGAGTATGGGCAAGGACTTTTACAAGTTACTTTAACAGTGGAGAAAATGAACGAAAcacaaagaggaagaaaaaaatgtgatgatttAGGTCGGTCAAAACCTTCTATAAACAAAGTGATCACACAAATAATAGCACTTTCAAAACCTTattgtgttgctgttatttatataaaatacattatatatgacAGCATGTGAGAGAGTACAGTAAAACAGATCAAGTTAAGCCTGTAATTTCAGAGCGAAGGCTTACAATAGAATCTATTCTTAAAACTGTTATTTCTTTCTTGGAAAACAAACCAATCACATTCTTCAAAAGACTATGTCATAGCTAGCAAAGGGTCAGCCCTGCCTCCTCACTaagattaaagtttttgttgtttcatcACTCCTCACTCAGAGTTGACCTCAGATTGGTTCTGAATCACTTTCAGCAAAGACTCCTAGCTAGAAAATTGAAAGATAAATTAGGAGCTCTCTGAGAGGATTGTTAGAATCTTTAATAATACGGGCCCTGATGAAATTGCTGGattgcattaaatgtaattacctCTTATGTGTGTCAGTGCTGTCAACAAAATTGGCTGTGCAAGGTATTTGCTGGTTGTTAAATACAGTTacctaaaattattttattgaatgtacactgaacaaaattatGAACGCAACTCTTTGTTTTTGCCTTAATTTTTAATGAGCTGAACTCACAAATCTATTACTTTCTCTATGTACACAAAATGCcaatttctctcaaatattgttcacaaatctgtctaaatctgtgttattgaGCACTTCTCCTTTGCCGGGACAACCCATCCACTTCACAGGTACGGCGTATCAAGATGCTGATCAGACAGCATGATTATTGCACAGGTGTGCCTTAGGCTGGTCACAATAAAAGGCCACTCTGAAATGTATGAAATGCATTCTAATTACAGGAATGTCCACCAGAGCTGCTGCCCGTGAACTGAATGTGACCCAGTCTAGGACCTCCACATCCACATCTTCACCTCCAAGATCGCCTGAGGCGCTTCCAAAACTCCCTGTCTGCCATTGGTCAAACAAATAATTCTTTGAAGGAATCAACCTTCAACCTTTAAGTAGCTTACTTAAAGCTGTCTTTGCAAATTGGAGTGGGTTGATTCAAACCAATAATGGTtttgtgagtcttttgaaacgttttacattttaacatctatttgTTGTCTCTgtagtatttgttttatatcattaagttttttttatgtcattaggtttagaaaaaataaaaggtaattgtAACTTTTCAACTCACAATGTCTCACAACTGTGATTAATGTAAACTGTTTTCTGAGAACTCTGAATGcaatttcagaaatgtaatatgAGATTTTGTGcctttataaacacaaaatggaatgtgcaaaatttttaaaaatgaaatgcatttcatgAAACAGAATCTTTTGGATTTGAGGTGAAAACATAAATTGCTTGATATTAACTGAGCAAAAaattctctaaaaataaaagtgagaaTTGCATAATAAATGCCCTCggttctgagaaaaaaaaatctgaaaggtGAGTTGAAACTATTCTGAGaaaaaattgcaagatataaaattaaataaaataaatcttgattCCGAGATACCAACTCAGAATACCGAGaataaacaaaatctaaattataatagaaattataagaaaaaaactcCTGTGTATGTGATATTTCTGAAAGCCCCTGCAAGCTTCGTGAGGACATGTGCCAAGAGAAAAGTCAAGGCCTGACAGGACATTTCTGCGATGATACATATCAAAGGTCAGACCTGACAAATAAACGACAGCCACCTGGGCAGCGGCCACCTGCCACCGAATCTAAATCCGGCTCAGGGTCGTGGCTAAAGCCATTAGTGctgtatattatatagaaattatTCGAGGCGAATACAATATTAAAGTAACAGAGTCCGGACCAGAGCCAGAATTAGTATACAGTGATGAAGTGTCCATCTGCAACACTTTCGTAAGACAATGGATACTTGCTGAGGTAGCGATTCTTCAACTGGGACCTAAGAATACATATAAAGCAGGAGGTAGCTTCTCTCAGCAATTTCGTACAGTGTACAGCAAGTTTCTGCTGAGTTGCATGAGTGGGATGGCCACCACTATGTCATCTCGGAGGATCTCAATGGATCCCCTGGCCACAAAGTAGAGGGCCGTCAGAACATCCCCGCAGTGCACCAGTGTGTCACCCGGTGGGGCATGAGTGGTCTTAAAGCGCATCGCCAGTGCCCGTAGGCATCCTTTGGTCGCTCCACGGAAAGCCTTGCAGCTCTGGAGCAAACTTTTATTAAGATGAAGACAGATATCAGCCTGCAGGCACTCTGGAAAGCCCTTCAGTACCTCCATATTCATGTCGATGCCATTGGTGTATGTCCATGCGTGTTGGAAGTACTCCTCGAGTCTTTGTCTCAGCGGGTTGGGGATCTGGTGGAAGCGAATGAATTCTTTGACCCGAAGCATCTGCAGATGGTACCGAGCTGTTCCTGAGTACAGTCGCTGAATTATAGCAGACACATTCCCAAAGATACTAGCATACATTAGAG

Function

NR:

description
potassium voltage-gated channel subfamily H member 7-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63111 True 3216 lncRNA 0.39 3 4698903 4704503

Neighbor

gene id symbol gene type direction distance location
scn1lab scn1lab,LOC107677574,LOC107705566,LOC107660039,LOC107581364,LOC107706643,LOC108242159 coding downstream 78566 4590164 ~ 4620337 (-)
xirp2a LOC107581361,LOC107677546,LOC107706644,LOC107705540,LOC107660038,LOC107584781 coding downstream 116639 4554470 ~ 4582264 (-)
b3galt1a b3galt1a,LOC107706645,LOC107677552,LOC107660037,LOC107705557,LOC107584782,LOC107581362 coding downstream 148290 4541260 ~ 4550613 (-)
itm2ba itm2ba,LOC107677554,LOC107584788,LOC107660034,LOC107705560,LOC107581357 coding downstream 204887 4487736 ~ 4494016 (-)
zp2l2 NA coding downstream 235406 4460324 ~ 4463497 (-)
sp3b sp3b,LOC107740591,LOC107677581,LOC107581370,LOC107660043,LOC107584779 coding upstream 43535 4748038 ~ 4759615 (-)
ola1 ola1,LOC107660044 coding upstream 55721 4760224 ~ 4765355 (-)
wipf1b wipf1b,LOC107740590,LOC107677587,LOC107581373,LOC107705551,LOC107660046,LOC107584775 coding upstream 70398 4774901 ~ 4787826 (-)
chrna1 chrna1,LOC106595477 coding upstream 84016 4788519 ~ 4793257 (-)
atp5mc3b atp5g3b,LOC107581374,LOC107677599,LOC107705563,LOC107740588,LOC107584774,LOC107660047,LOC108430874,LOC103042584 coding upstream 89537 4794040 ~ 4796189 (-)
G42614 NA non-coding downstream 193236 4503734 ~ 4505667 (-)
G42615 NA non-coding downstream 195697 4502720 ~ 4503206 (-)
G42606 abi2 non-coding downstream 224111 4473919 ~ 4474792 (-)
G42586 NA non-coding downstream 266576 4430558 ~ 4432327 (-)
G42551 NA non-coding downstream 382792 4311809 ~ 4316111 (-)
LOC122346990 NA non-coding upstream 162624 4867127 ~ 4881393 (-)
G42955 baz2b,LOC107677545 non-coding upstream 429299 5133802 ~ 5228971 (-)
G42960 LOC107584764,LOC107677591,LOC107743335 non-coding upstream 434896 5139399 ~ 5238937 (-)
G42956 NA non-coding upstream 454841 5159344 ~ 5173432 (-)
G42969 NA non-coding upstream 466693 5171196 ~ 5172061 (-)
nudt15 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 other downstream 201485 4493912 ~ 4497418 (-)
cdk15 cdk15,LOC107706659,LOC107677597,LOC107660030 other downstream 283690 4394407 ~ 4415213 (-)
G42351 NA other downstream 737361 3958367 ~ 3961542 (-)
cep20 fopnl,LOC107706683,LOC107713084 other downstream 744572 3952528 ~ 3954331 (-)
cep170ab cep170l,LOC107581301,LOC107678228,LOC107672679,LOC107567737,LOC107753897 other downstream 1590965 3092540 ~ 3107938 (-)
dnah9l dnah11,LOC107581427,LOC107677540,LOC108430841,LOC108272446,LOC103372266,LOC104955736,LOC107740597,LOC102781332,LOC107384434 other upstream 4787 4709290 ~ 4738542 (-)
gpr155b gpr155b,LOC107740589,LOC107581372,LOC107584777,LOC107705544,LOC107677583,LOC107660045 other upstream 61878 4766381 ~ 4774546 (-)
LOC122347558 cycsb,LOC103040542,LOC108273362,LOC108430847 other upstream 113688 4818191 ~ 4825466 (-)
sumo3a sumo3a,sumo3b,LOC103392195,LOC107668404,LOC108430868 other upstream 178284 4882787 ~ 4886349 (-)
G42958 LOC107742327 other upstream 524953 5229456 ~ 5230710 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G178725 NA non-coding NC_053128.1 CM020925.1 29528425 ~ 29531359 (+)