G178725


Basic Information

Item Value
gene id G178725
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 29528425 ~ 29531359 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU241945
aatattgttcacaaatcttTCTCAATCTGTGTTAGTGtgcacttctcctttgccgagTTTTAGGTGTTATGGTTAGGGATcaaccatctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgacctGACTGCAGTTTATCATCGTAACCATCTTGAGTGGGCAAATGCTCACATTCGATGGTGTCTGGCACTTTGGAGAGGTGTTCTCTTCAcggatgaaccctaaccctaacaccagatactgactggttttcgggacccccccctccccccagtacagtaaaactgcacattttagagcaGCCTTTTATAGTGTccagcctaaggcacacctgtgcaataatcatgctgtctaatcagcaccTTGATacgccacacctgtgaggtggatggattttctCAGCAAAGGAGAAggactcactgacacagatttagacagatttgtgaacaatatttgagagaagtaggccttttgtgtacatagaaaaagtcttagatctttgagttcagctcatgaaaaatgggggcaaaaacaaaagtgttgcgtttataattttgttcagtatatTTACAGAATCCTACAAAACTCTTCCAGCCATCTTGGTGAaaagatatttagtttgttTCTGTTGCTTCACTACCCGATCCGTACCGGAAACTAGAGGTGGGAAACTCTAGACCCCTTTACGATTTGATTCAGATTATAAAACGATTCTCTATGCATCTTGTTGCATCAAAGACAACAATACATGTTTTGCGATTGATTTTTTCTCACTGTGGGACTACTTCCTAGTTTTAAAACCTATATTTGTAATGATCCATGCTTAAACAGATACATTTACTTCCATTATCTTTTATTAATACAAGGAACATGAAATATGGTCCCTcatgtttgttgtgttaccAAATAGTTTAGTTAGACACAACTTGCATACAGTGTGTCTCTCATCCAGGGTCCCTTAAACTTCATAGAAGCCAAAATGCTTCCACGCGCTAGCTTTTAACCCTGGGGGTGTCGACCGGTTTGTATCCATATGTGGTTGGTTGCTCACactcacttccgggattgttcaggtgccgcaggaaatggttaactgctcctcagatctctgcagggtaaatccagacagctagctagactgtctgtccaatctgagttttctgttgcacgactaaaacaaccttttgaacgtacacacgttccaccaaaacaagttccttccagaggctattttccagcggcaccgtggctccgtccggcgtttagtgccgcccaagacaattgtgattggtttaaagaaatgccagtaaaccaaagcacgtttttctcccatcccagaatgctgtgtggaaatgcgagactagtagtAGCCTAGCTTAGAACACAACGCACATTTTTACTTCCATAAGGTTGCACCAATCATTTCGTTCAGCTGTAAGGAACATATAGCCCGGTCGCAAAAAGTTGTTACCGGTAATCACATCAGGGTAATAATGTGAACTGAAACTTTTGATGTTATTATTAAGTTATAGTGGTATATATGTTGATGTTTGTTTCCAGTAACCTGGATTGGAAAATATAGTCACAACTTAAAAGAAACGAGTGTATTAATTAACAGATGAAACCTTTTTTCatccagatgttttttttgaagAGTCTTTGAGGATTCTGCAAAGACCTTCAGTTAACAACTACTATTGTTACCTGAACTTAGCccggttgacaccagacccttctccgttgtaactgagaagggtctggggaaccatcattcacagcccatttccaaaggggcgtcgcCAACGGACGCAGCTCAAATGCCtttgggcgcaattggatagaccttcaaccaatcagaccaacgatccgggtgacgtagcagcgacagcttggaaaaattggaaatgggcttgaatgggttctcggccagactgacttgcagagctaatctcaaatttgccggaagttcgtcagagAGTTTTCCCAGGCTAGCCTTGAACTAGTTCCAGGGGGGAGAACAGTGGAAATGAAAGCAGAACCTGCAACAGTGGCTACATGTTGGGTTCCTGTAGTGGAAAAGTGAGTTGATACAGCGAACAGGGTAGACCAGGCGCTCACCGACTGCTCTACATCACATGTATTTTGTCCTGTCTAATAACGTGTCAGAAGCATGTTTTGAAACCCCTTTACAATATGTGTAAACCCGTCTTGAAACATTCCTTATTTGAGTTATATCGAACATCTTTGAGTGTTGAAAGTTGATCTTGCTTTTACTGAAGCGGGTGACGATACTACCTTAAAAGCCATTTCTTGGTAGAAACACAACTGTAGTAATACTTGACAAGAAACCCTAACTTTATGCAATATATTCATACATATTGATGCTGTATTTGCGTGTTGTGTTCAACAAATGAACTTGCTATAATTCCCTCCATCCTGATCCTTGCGTGAGAAGTGTTTTCATGTCGCAGCTCGGACTTTTGCCGCCGTTTCATAATtgagtgtgtttatgtatgtcgGTATACGCTCACAAAGTACTTGTTTAACGGCTTCTGAGAAGAGTTGAAGGGGCTGACAATGCTGTGACTAACTCTTTACAGAGCCATTTTTAATGTAGTGGATTTTATTGAGTTGCTGTAttttcagtcagtcagtcattcCTTATGTCGGCTGTGATCAGTCAACCAGATgtgtaatatataaatatatatatatgtacgcGTTCCGTTTCTCTGTTTGTATTGGCTCAGTTTGTGGCGAAATCATTGCCGGTTCATATGAGATCACGTCTGTTGTTCTGATTAATGTGTGAAAACTTATTTTTTCCAAGATTAAATGTGCGAACATTTCATCAATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241945 True 2892 lncRNA 0.42 2 29528425 29531359

Neighbor

gene id symbol gene type direction distance location
pi4kaa LOC104948040 coding upstream 953 29474565 ~ 29527472 (+)
slc25a1b LOC101069509,LOC103373622,LOC106568272 coding upstream 55450 29460509 ~ 29472975 (+)
tor4aa tor4a coding upstream 87389 29430110 ~ 29441036 (+)
LOC120546010 brap,LOC102795910 coding upstream 100243 29412197 ~ 29428182 (+)
naa25 naa25 coding upstream 116888 29377691 ~ 29411537 (+)
marveld2a marveld2 coding downstream 4436 29535795 ~ 29548022 (+)
oclna LOC103389949,LOC103373407 coding downstream 21999 29553358 ~ 29568249 (+)
LOC120544985 NA coding downstream 52684 29584043 ~ 29587640 (+)
ckmt2a ckmt2 coding downstream 138213 29669572 ~ 29690308 (+)
zfyve16 LOC101158542,LOC107104482,LOC106569324 coding downstream 209073 29740432 ~ 29790668 (+)
G178710 NA non-coding upstream 69889 29445053 ~ 29458536 (+)
G178521 NA non-coding upstream 496063 29031515 ~ 29032362 (+)
G178491 NA non-coding upstream 620054 28904473 ~ 28908371 (+)
G178468 NA non-coding upstream 679542 28846471 ~ 28848883 (+)
G178460 NA non-coding upstream 696095 28828109 ~ 28832330 (+)
G178728 NA non-coding downstream 12800 29544159 ~ 29544741 (+)
G178835 LOC104948034,LOC103371291,LOC107101750,LOC105915605 non-coding downstream 161079 29692438 ~ 29701839 (+)
G178847 NA non-coding downstream 240961 29772320 ~ 29790111 (+)
G178848 NA non-coding downstream 241292 29772651 ~ 29773165 (+)
G178858 NA non-coding downstream 270938 29802297 ~ 29803683 (+)
G178529 NA other upstream 436099 29084949 ~ 29092326 (+)
ptpn11a ptpn11 other upstream 445414 29006621 ~ 29083011 (+)
G178506 NA other upstream 582981 28944507 ~ 28945444 (+)
LOC120544907 hnrnpd,LOC104960871 other upstream 940393 28580268 ~ 28588032 (+)
LOC120545218 NA other upstream 956030 28567146 ~ 28572395 (+)
rasgrf2a NA other downstream 70172 29601531 ~ 29667231 (+)
G178845 NA other downstream 211264 29742623 ~ 29750295 (+)
LOC120545429 LOC104948058 other downstream 262445 29793804 ~ 29795825 (+)
G178881 NA other downstream 489960 30021319 ~ 30022217 (+)
zmiz2 zmiz2 other downstream 728007 30259366 ~ 30310894 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G42644 LOC101169590,LOC106917580,LOC108430882 non-coding NC_056704.1 CM032073.1 4698903 ~ 4704503 (-)