LOC120545429 (LOC104948058)


Basic Information

Item Value
gene id LOC120545429
gene name LOC104948058
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 29793804 ~ 29795825 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU242091
TCCAGGTGTTCTACCAGCCCAAGACTCCCGACTGCAGCCTGGCGTCGGTGCTGGCGTCCTGCAGCGTGTTTCAGAAGGAGATGGCTCTGGCCGCCTGCAGCGCGCTGACTCCTCACCTCGCCGTCCTAGCATCCAGTGGCATCAACTCGCTCTCGCTTCGCATCTCCACACAGGCTGATAtgGTGGAGTACCAGGCCGGCTCGGGAGGCCGCCTCCTCCCTCAGCGCTACATGAACGAGCTGGACAGCGCTCTGATCCCCGTCATCCACGGAGGTAGCGCAAGCGTACCGCAGACTGCCATGGACATGGAGTTCATCTTCTACATCACACACACCATCTGACGCACATGCAGACACCCttcaaacagtgtgtgtgtg
>XM_039779735.1
atccgtggctcaattcaaactgaATCAAAAAATTATTATTCTCTCTCCATTGACGCTCGTTCATATTCTTTCGAAAGATAAGGTCCCATGacccggaagtagaagggcgtgacttcggctctctatagaAGTTCACGGTCTGAAGTTTAGTAAACTTACTGCACCGTGCGTCGGAGAGAATGATCGATccccctctagttttaaaagTGCGGGGAACCACCACCAGCCTCTGACCCAGTGACCTCAGACTACAGGTGGGAGTACGAAGCTGTACCAAGTCAGAgatgtaggggggggggggaacttgAGCGTGCAGGTGCGTGAGTGTTTGAATGTCTCCTCCAGGTGTTCTACCAGCCCAAGACTCCCGACTGCAGCCTGGCGTCGGTGCTGGCGTCCTGCAGCGTGTTTCAGAAGGAGATGGCTCTGGCCGCCTGCAGCGCGCTGACTCCTCACCTCGCCGTCCTAGCATCCAGTGGCATCAACTCGCTCTCGCTTCGCATCTCCACACAGGCTGATAtgGTGGAGTACCAGGCCGGCTCGGGAGGCCGCCTCCTCCCTCAGCGCTACATGAACGAGCTGGACAGCGCTCTGATCCCCGTCATCCACGGAGGTAGCGCAAGCGTACCGCAGACTGCCATGGACATGGAGTTCATCTTCTACATCACACACACCATCTGACGCACATGCAGACACCCttcaaacagtgtgtgtgtggggggaggagggggggagaagGTGGTTGAGCACATTTGAGAGAGAAGCTGTCGATCGTGGCAGGAAATGCTGATGCAACGGCtcgtttctttttcttttttttggttgcGCATTAGGACATGCAGCCCGTCACAGAGGACAGCCGGCACTACATTCCCACTCTGAGGTTGGACATGTGTTACTCTGGAGGGATTGTTGtgcgttttgtgtgttttttttttcgtgcTCACCAAAGCTGCTTTAATACAAGAAGCCAAACACTAAACCAAGGATTACGACGACGACGACATGACCAAATACAACCAAACTATTCaaaccattttattttcttcttctgctcTGCCTTCCAAAGCTCCCCGctggccccccccccctgtcaGCTCGGAGCACCTCAGTGAATGTTTCCCCACAGACGCTCTTAACGAAATGTCTCTTCATTTGgatgtatttattatattttaatacGGGCTTATTGAATGAAATGATCATATTAAAGCAAAAGGGGACGATA

Function

NR:

description
PREDICTED: zinc finger FYVE domain-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242091 False 377 TUCP 0.60 2 29794144 29795314
XM_039779735.1 True 1228 mRNA 0.51 2 29793804 29795825

Neighbor

gene id symbol gene type direction distance location
zfyve16 LOC101158542,LOC107104482,LOC106569324 coding upstream 3136 29740432 ~ 29790668 (+)
ckmt2a ckmt2 coding upstream 103496 29669572 ~ 29690308 (+)
LOC120544985 NA coding upstream 206164 29584043 ~ 29587640 (+)
oclna LOC103389949,LOC103373407 coding upstream 225555 29553358 ~ 29568249 (+)
marveld2a marveld2 coding upstream 245782 29535795 ~ 29548022 (+)
sec14l7 LOC103371288,LOC105915608,LOC104948033,LOC101066937,LOC106935672 coding downstream 35538 29831363 ~ 29841705 (+)
LOC120545067 cnnm4,LOC103473218,LOC107395816 coding downstream 50528 29846353 ~ 29882921 (+)
LOC120545406 cnnm3 coding downstream 99852 29895677 ~ 29925265 (+)
il1b NA coding downstream 155627 29951452 ~ 29965248 (+)
gnsb gns,LOC104931705,LOC103374629 coding downstream 265775 30061600 ~ 30088020 (+)
G178847 NA non-coding upstream 3693 29772320 ~ 29790111 (+)
G178848 NA non-coding upstream 20639 29772651 ~ 29773165 (+)
G178835 LOC104948034,LOC103371291,LOC107101750,LOC105915605 non-coding upstream 91965 29692438 ~ 29701839 (+)
G178728 NA non-coding upstream 249063 29544159 ~ 29544741 (+)
G178725 NA non-coding upstream 262445 29528425 ~ 29531359 (+)
G178858 NA non-coding downstream 6472 29802297 ~ 29803683 (+)
G178854 NA non-coding downstream 44011 29839836 ~ 30106722 (+)
G178851 NA non-coding downstream 94520 29890345 ~ 29893184 (+)
G178859 NA non-coding downstream 129909 29925734 ~ 29995516 (+)
LOC120545430 NA non-coding downstream 160445 29956270 ~ 29958389 (+)
G178845 NA other upstream 43509 29742623 ~ 29750295 (+)
rasgrf2a NA other upstream 126573 29601531 ~ 29667231 (+)
G178529 NA other upstream 701478 29084949 ~ 29092326 (+)
ptpn11a ptpn11 other upstream 710793 29006621 ~ 29083011 (+)
G178506 NA other upstream 848360 28944507 ~ 28945444 (+)
G178881 NA other downstream 225494 30021319 ~ 30022217 (+)
zmiz2 zmiz2 other downstream 463541 30259366 ~ 30310894 (+)
LOC120545414 LOC106676976 other downstream 528287 30324112 ~ 30331614 (+)
G179407 NA other downstream 1591922 31387747 ~ 31480094 (+)
LOC120545154 hapln1,LOC101070352,LOC100699000,LOC101480665 other downstream 1769420 31565245 ~ 31653583 (+)

Expression


Co-expression Network