RNA id: XM_039779735.1


Basic Information

Item Value
RNA id XM_039779735.1
length 1228
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC120545429
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 29793804 ~ 29795825 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atccgtggctcaattcaaactgaATCAAAAAATTATTATTCTCTCTCCATTGACGCTCGTTCATATTCTTTCGAAAGATAAGGTCCCATGacccggaagtagaagggcgtgacttcggctctctatagaAGTTCACGGTCTGAAGTTTAGTAAACTTACTGCACCGTGCGTCGGAGAGAATGATCGATccccctctagttttaaaagTGCGGGGAACCACCACCAGCCTCTGACCCAGTGACCTCAGACTACAGGTGGGAGTACGAAGCTGTACCAAGTCAGAgatgtaggggggggggggaacttgAGCGTGCAGGTGCGTGAGTGTTTGAATGTCTCCTCCAGGTGTTCTACCAGCCCAAGACTCCCGACTGCAGCCTGGCGTCGGTGCTGGCGTCCTGCAGCGTGTTTCAGAAGGAGATGGCTCTGGCCGCCTGCAGCGCGCTGACTCCTCACCTCGCCGTCCTAGCATCCAGTGGCATCAACTCGCTCTCGCTTCGCATCTCCACACAGGCTGATAtgGTGGAGTACCAGGCCGGCTCGGGAGGCCGCCTCCTCCCTCAGCGCTACATGAACGAGCTGGACAGCGCTCTGATCCCCGTCATCCACGGAGGTAGCGCAAGCGTACCGCAGACTGCCATGGACATGGAGTTCATCTTCTACATCACACACACCATCTGACGCACATGCAGACACCCttcaaacagtgtgtgtgtggggggaggagggggggagaagGTGGTTGAGCACATTTGAGAGAGAAGCTGTCGATCGTGGCAGGAAATGCTGATGCAACGGCtcgtttctttttcttttttttggttgcGCATTAGGACATGCAGCCCGTCACAGAGGACAGCCGGCACTACATTCCCACTCTGAGGTTGGACATGTGTTACTCTGGAGGGATTGTTGtgcgttttgtgtgttttttttttcgtgcTCACCAAAGCTGCTTTAATACAAGAAGCCAAACACTAAACCAAGGATTACGACGACGACGACATGACCAAATACAACCAAACTATTCaaaccattttattttcttcttctgctcTGCCTTCCAAAGCTCCCCGctggccccccccccctgtcaGCTCGGAGCACCTCAGTGAATGTTTCCCCACAGACGCTCTTAACGAAATGTCTCTTCATTTGgatgtatttattatattttaatacGGGCTTATTGAATGAAATGATCATATTAAAGCAAAAGGGGACGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242106 lncRNA upstream 3693 29772320 ~ 29790111 (+) True G178847
TU242107 lncRNA upstream 20639 29772651 ~ 29773165 (+) True G178848
TU242097 lncRNA upstream 43509 29742623 ~ 29750295 (+) False G178845
TU242104 lncRNA upstream 43509 29742623 ~ 29750295 (+) False G178845
TU242102 lncRNA upstream 50474 29742623 ~ 29743330 (+) False G178845
TU242123 lncRNA downstream 6472 29802297 ~ 29803683 (+) True G178858
TU242116 lncRNA downstream 44011 29839836 ~ 29844941 (+) True G178854
TU242118 lncRNA downstream 46841 29842666 ~ 30106722 (+) False G178854
TU242111 lncRNA downstream 94520 29890345 ~ 29893184 (+) True G178851
TU242124 lncRNA downstream 129909 29925734 ~ 29995516 (+) True G178859
XM_039779059.1 mRNA upstream 3136 29740432 ~ 29790668 (+) True zfyve16
XM_039779724.1 mRNA upstream 103496 29669572 ~ 29690308 (+) True ckmt2a
XM_039779725.1 mRNA upstream 103496 29669572 ~ 29690308 (+) False ckmt2a
XM_039779058.1 mRNA upstream 126573 29601531 ~ 29667231 (+) True rasgrf2a
XM_039778902.1 mRNA upstream 206164 29584043 ~ 29587640 (+) True LOC120544985
XM_039779722.1 mRNA downstream 35538 29831363 ~ 29841705 (+) True sec14l7
XM_039779060.1 mRNA downstream 50528 29846353 ~ 29882921 (+) True LOC120545067
XM_039779699.1 mRNA downstream 99852 29895677 ~ 29925265 (+) True LOC120545406
XM_039779729.1 mRNA downstream 155627 29951452 ~ 29965248 (+) True il1b
XM_039779706.1 mRNA downstream 265775 30061600 ~ 30088020 (+) True gnsb
TU242100 other upstream 49729 29742623 ~ 29744075 (+) True G178845
TU241682 other upstream 701478 29084949 ~ 29092326 (+) True G178529
TU241633 other upstream 848360 28944507 ~ 28945444 (+) True G178506
XR_005636601.1 other upstream 1205778 28580268 ~ 28588026 (+) False LOC120544907
XR_005636773.1 other upstream 2095872 27656536 ~ 27697932 (+) False lhfpl2a
TU242148 other downstream 225494 30021319 ~ 30022217 (+) True G178881
TU242149 other downstream 225494 30021319 ~ 30022217 (+) False G178881
XR_005636691.1 other downstream 468558 30264383 ~ 30310894 (+) True zmiz2
TU242927 other downstream 1591922 31387747 ~ 31480094 (+) True G179407
TU243294 other downstream 2283352 32079177 ~ 32099542 (+) True G179655

Expression Profile