RNA id: XM_039779722.1


Basic Information

Item Value
RNA id XM_039779722.1
length 1575
RNA type mRNA
GC content 0.53
exon number 10
gene id sec14l7
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 29831363 ~ 29841705 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATTTCTCCTCCACTGACCAGgatgttctctctctttcttcttcagcATCGTATTTCTCCTCCACTGACCAGgatgttctctctctttctttttgcaGCTCGAAGCTTCAGTGTTGAGAAAGCTGAAGCCATGATCAGAAAGcatGTGGAGTTCAGGAGGAAGATGAACGTAGACTCCATCATATCTGACTGGAAACCTCCAGAGGTGATCGAGCAGTACGTGTCGGGGGGGATGTGTGGTTACGACCGAGAGGGGAGCCCCATCTGGTATGACATCATCGGTCCTCTGGACCCTAAAGGGCTGTTGCTGTCGGCAACCAAACAGGACTTCCTGAAGTCCAAGATCCGCCACACGGAGATGATGCAGAGGGAGTGTCGGAGGCAGTCGGAGAAGttgggGAAGAACATTGAAGCGATCTCTCTGATCTACGACTGTGAAGGACTGGGACTGAAACACATCTGGAAACCGGCTATTGAGACGTACGGAGAGATCCTCACCATGTATGAAGAGAACTATCCCGAGGGGCTGAAACAAGTGTTTCTTATCAAAGCTCCTAAAATGTTCCCCATGGCCTACAATCTGATCAAACACTTTCTGTGTGAGGAGACCAGACGCAAGATCAACGTTTTAGGAAGTAACTGGCAGGAAGTGTTGCGTCAACACATCGACCCAGATCAGCTGCCTGTGGCGTACGGAGGGACCCGGACTGACCCTGATGGAGACCCCCGCTGCAGGACcatgatAAATTACGGCGGCACGGTTCCCCGGTCGTACTACGTTCGGGACTCGGTGAAGGTGGAGTACGACTGTAGCGTGACGGTCGGCCGAGGCTCCGTCTTCCTGCTGGAGTACGACGTTACAGCCGCCAGCAGCCTGCTGAGGTGGCAGTTCGCCAGCGACGGAGCAGATATCGGGTTTGGAGTGTACAGACGGACCAAAGAACGCGGCGGACAGGAAGTGGCGGAGATGCTGCCGGTTCTGCCCAGCGAGCGCTACAACGCACACCTGGTCCCCGAAGACAGCCGCCTCACCTGCACCGAGCCCGGCGTCTACGTGCTGCGTTTTGACAACAGCTACAGCGTGCTGCAGTCCAAGAGGGTGAGCTACAAAGTGGAGGTTCTCCCTCCTCCGGACGGGCAGACGCAGAGTCCACGCAGCCGAGGAGACTGATCCAGGACACAcagatccctctctctctgtgacggACCAATCATCGACGGCTAAATCAACGTTTCTCACATCGAGCAGGGTTGTTGTCGTTAGATAATCCATGTGATGTGTAAAGATTTTACAATTTGTGACAATTCAGGACAACAAAGAAGATCTAAAGTATTATTTTTCTAGAAAAACTTGCTTCACCAACATTTCAAACCAGATAACTTTAACTGTTACAGTTAAGGATCattggggcgcctgggtagctcacctggttgagctacccaggcgccccatgTACGGAGGCTCAGTTTGTgccgcagcggccgcgggttcgatgccgacctgcggccctttgctgcatatcattccccctctcttccactttcatgtcttcagctgtcccataaaataaaggc

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242123 lncRNA upstream 27680 29802297 ~ 29803683 (+) True G178858
TU242106 lncRNA upstream 41252 29772320 ~ 29790111 (+) True G178847
TU242107 lncRNA upstream 58198 29772651 ~ 29773165 (+) True G178848
TU242097 lncRNA upstream 81068 29742623 ~ 29750295 (+) False G178845
TU242118 lncRNA downstream 961 29842666 ~ 30106722 (+) False G178854
TU242111 lncRNA downstream 48640 29890345 ~ 29893184 (+) True G178851
TU242124 lncRNA downstream 84029 29925734 ~ 29995516 (+) True G178859
XR_005636694.1 lncRNA downstream 114565 29956270 ~ 29958389 (+) True LOC120545430
TU242150 lncRNA downstream 181326 30023031 ~ 30023479 (+) True G178882
XM_039779735.1 mRNA upstream 35538 29793804 ~ 29795825 (+) True LOC120545429
XM_039779059.1 mRNA upstream 40695 29740432 ~ 29790668 (+) True zfyve16
XM_039779724.1 mRNA upstream 141055 29669572 ~ 29690308 (+) True ckmt2a
XM_039779725.1 mRNA upstream 141055 29669572 ~ 29690308 (+) False ckmt2a
XM_039779058.1 mRNA upstream 164132 29601531 ~ 29667231 (+) True rasgrf2a
XM_039779060.1 mRNA downstream 4648 29846353 ~ 29882921 (+) True LOC120545067
XM_039779699.1 mRNA downstream 53972 29895677 ~ 29925265 (+) True LOC120545406
XM_039779729.1 mRNA downstream 109747 29951452 ~ 29965248 (+) True il1b
XM_039779706.1 mRNA downstream 219895 30061600 ~ 30088020 (+) True gnsb
XM_039779726.1 mRNA downstream 267069 30108774 ~ 30115546 (+) True nudcd3
TU242091 other upstream 36049 29794144 ~ 29795314 (+) False LOC120545429
TU242100 other upstream 87288 29742623 ~ 29744075 (+) True G178845
TU241682 other upstream 739037 29084949 ~ 29092326 (+) True G178529
TU241633 other upstream 885919 28944507 ~ 28945444 (+) True G178506
XR_005636601.1 other upstream 1243337 28580268 ~ 28588026 (+) False LOC120544907
TU242148 other downstream 179614 30021319 ~ 30022217 (+) True G178881
TU242149 other downstream 179614 30021319 ~ 30022217 (+) False G178881
XR_005636691.1 other downstream 422678 30264383 ~ 30310894 (+) True zmiz2
TU242927 other downstream 1546042 31387747 ~ 31480094 (+) True G179407
TU243294 other downstream 2237472 32079177 ~ 32099542 (+) True G179655

Expression Profile