RNA id: TU242118


Basic Information

Item Value
RNA id TU242118
length 1491
lncRNA type read_through
GC content 0.42
exon number 2
gene id G178854
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 29839836 ~ 30106722 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaaaaaaaggaaacgcattgaatgagaaggtgtgtccaaacttttggcctgtactgtatgtaaggagataacataggcacaggctaattactgatcactaacatgctagttaacattagtaattaaacctaatggaatagctaatggaagtccaaactgcctgtgagcttctcctgtactatacggtaattcctctactgtgtgacagtaagtctcgtggttatgacccaatcgttagcctattattataaaagcgtctgctacggagccataacgtgaggtacaaggtaatggagccttttatacattgtcgtgtttctttagaactaaacaacggacaaatagagtctttaaacgcttcagatgtaaagttattcgctgtcaaagtggcgccaaaatgtatgctagttagtggaatgctaacgggaggtgatctctttgtagcgtcaaaatggcgccataggaggttcgagttctgaagcgaagcttacccccttggcaaCCACCGAGTACCCCgagctaaaaatccaacatggctgctccatGCAccaacagtagtgaaagctgtagtaacatacagttataagctcttctgtgttatttgtgtctcactaaatcagtcgtacagACGGCGCTGTCCATATTCTGTCTGTGGACCTGTTgctacgctgtttgtatgcacaaaaaagcTGCGTAATGCGTTGCTAACagtggctaacctggctagagctaatgaaaacaatgaaaatccgacttgtaaatggaacgcactagtTACCGTAGCTCCGTCTATATCTgctgtaaatcattttgtgactttgcagGAAAAATCGGACCGGGCAGAGgctttaataaaaactatattaaaactagcgttcttttcactgttagtcttgtttgctgttacaggtcatttatgatcatcagatggaaaatGACAGTTTCAAAAACATTacaaagttacatatagtcactttaattaATGAAGAATCTTCAGTTACATTTAGTTTAAGTActtttaaagtgttcatattatgctttttggctttttctcttttcctttattgtgttatatatcttttttgtgcatgttacaggtttacaaagtagaaaagcccaaagtccccccaaagggacttaccatctccaacagaaaacactgttcaccaactgctccaaacagctctgttgtagtccagcctttacttcagagacagacgtggtcactttggaacacacgttaaaatgctcgcctagctgctagcatggcacgccctcatactctgcttctgactggctagtagtccttacctaggtactgtcagggcacgccctcatactctgcttctgactggctagtagtccttacctagctactgagcatgtgcgactcccaacaaagatggaacagaagtgagaggtctcactctgtagctaaaacagagagctcaacacacagggtgaaaagaggagctgcagcaatgtgcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242123 lncRNA upstream 38983 29802297 ~ 29803683 (+) True G178858
TU242106 lncRNA upstream 52555 29772320 ~ 29790111 (+) True G178847
TU242107 lncRNA upstream 69501 29772651 ~ 29773165 (+) True G178848
TU242104 lncRNA upstream 92371 29742623 ~ 29750295 (+) False G178845
TU242103 lncRNA upstream 99336 29742623 ~ 29743330 (+) False G178845
TU242182 lncRNA downstream 271 30106993 ~ 30108555 (+) True G178902
TU242189 lncRNA downstream 17916 30124638 ~ 30125211 (+) True G178907
TU242193 lncRNA downstream 49643 30156365 ~ 30156778 (+) True G178910
TU242196 lncRNA downstream 49643 30156365 ~ 30156778 (+) False G178910
TU242166 lncRNA downstream 71266 30177988 ~ 30183476 (+) True G178896
XM_039779722.1 mRNA upstream 961 29831363 ~ 29841705 (+) True sec14l7
XM_039779735.1 mRNA upstream 46841 29793804 ~ 29795825 (+) True LOC120545429
XM_039779059.1 mRNA upstream 51998 29740432 ~ 29790668 (+) True zfyve16
XM_039779724.1 mRNA upstream 152358 29669572 ~ 29690308 (+) True ckmt2a
XM_039779725.1 mRNA upstream 152358 29669572 ~ 29690308 (+) False ckmt2a
XM_039779726.1 mRNA downstream 2052 30108774 ~ 30115546 (+) True nudcd3
XM_039779712.1 mRNA downstream 13635 30120357 ~ 30177697 (+) True LOC120545415
XM_039779717.1 mRNA downstream 13635 30120357 ~ 30177697 (+) False LOC120545415
XM_039779711.1 mRNA downstream 13635 30120357 ~ 30177697 (+) False LOC120545415
XM_039779714.1 mRNA downstream 13636 30120358 ~ 30177697 (+) False LOC120545415
TU242091 other upstream 47352 29794144 ~ 29795314 (+) False LOC120545429
TU242100 other upstream 98591 29742623 ~ 29744075 (+) True G178845
TU241682 other upstream 750340 29084949 ~ 29092326 (+) True G178529
TU241633 other upstream 897222 28944507 ~ 28945444 (+) True G178506
XR_005636601.1 other upstream 1254640 28580268 ~ 28588026 (+) False LOC120544907
XR_005636691.1 other downstream 157661 30264383 ~ 30310894 (+) True zmiz2
TU242927 other downstream 1281025 31387747 ~ 31480094 (+) True G179407
TU243294 other downstream 1972455 32079177 ~ 32099542 (+) True G179655
TU243292 other downstream 1982706 32089428 ~ 32092131 (+) False G179655
TU243298 other downstream 1982706 32089428 ~ 32099542 (+) False G179655

Expression Profile