RNA id: XM_039779726.1


Basic Information

Item Value
RNA id XM_039779726.1
length 1533
RNA type mRNA
GC content 0.53
exon number 6
gene id nudcd3
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 30108774 ~ 30115546 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAGTATCACTATTGTTCtagaaggagaaacacacagGCGTTAAAAACGTTGCCCAGCGAGTCCCACTTATTAATAAACTTATATTTCTCGATAAAGGCACCTTATTTCGGTCTCTAAATCGTCGGTTGGGGTACTCCAGAGGTTAGTGAACACGGTTAAACGTTGAAAGCCGCCATGGCGTCGCCTCTGCAGATGACAGAGATGTACGACAACGCTCTGCTCGGGATCCTGCAGCACGTTGGGAACATTCAGGACTTTCTTCAGGTCTATTTCGGGTTCCTGTATCGCAAGACGGACTTTTATCGCTTGTTGTCGAGTCCCAACGAGAAGATGGGCTTCCCTCCCGGTGTGGCGGAGAAGATGGTGTTTAAGACGTTTAAGCTGTTTGAGAAGCTGGCGGAGCACGACCGAGGGAGGCAGCAGAGCGAGCtgcagaagagagaggagagtcgATGTGTTCCTCCGGCAGTTCAGGAGCTGGAGATCAGCGACCAGCCTCCAGAGGAGCGAGAGGAGCCGAGCACAGAGGAGAGCTCTCCCAGGGAGGTTCcagctccttcctcctcctcctcgtccgcGGCGGCCGCTGGCCCTCGGCCCGACAGCAGCGTCGGCGGTCCGGGCCCGTTGGCTCCGGGAGACCAGGCGGCTGCAGCCAGCGCAACCTCAGCACAAGAgagtCGGGAGAAGTTCCAGGCGGACCCCGACAGTTACAACGGGGCTGTGAGGGAAAACTACAGCTGGTCTCAGGACTACACTGACGTGGAGGTCCGAGTGTTCGTGCCCAAGACGGTTGTTAAAGGCCGACAGGTCAGAGTCAGTCTGCAGAGCGGCAGCTTGCAGGTCTGTGTGAAGGAGGGAGCCGAAGAGAAAACCCTGATGGAGGGAGAGTTCACCCACAAGATCAACACTGAGAACTCTCTGTGGAGTCTGGAGCCTGGACGCTGCGTGGTCCTGTCGCTCAGTAAGACCTCAGAGGTTTGGTGGAACGCGGTGCTGAAAGGAGAACAGGAGATTGATATAGACAAGATTAACCGCGAGCGCTCCATGGCAACGGTTGACGAGGAGGAGCACGCCGTTCTGGACCGACTCTCCTTCGACTACCACCAGAAGCTGCAGGGGAAACCCCAGAGTCACGAAATGAAAGTGCACGACATGCTGAAGAAGGGCTGGGACGCCGAAGGCTCACCCTTCAAAGGACAGCAGTTCGACCCCTCCATGTTTGACATCCCACCCAGCGCCGTGCAGTTCTGAGGCACGGCCAGCGACTCAGCCAAATATGAACTGAATCCTAGTTTATTTGCAGAGCTGCTCGTAGGAAAAGTCAACATTTACCTGCCGGTCTGTTGTGTTGGACTTTAATTATAAGAGCCGAACTgaagctgtttttttgtgtggcgTGTGACTACAGATGAGGACATGTCATTCTATCAAATGTTTATTTGATGTTTTGGTAGTAAGAAATCTGATAAATATGTGTTCTTTGTTAACTGTTTTgctctttatttaaaaaaaaaaaaaatctgcagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242182 lncRNA upstream 219 30106993 ~ 30108555 (+) True G178902
TU242118 lncRNA upstream 2052 29842666 ~ 30106722 (+) False G178854
TU242150 lncRNA upstream 85295 30023031 ~ 30023479 (+) True G178882
TU242124 lncRNA upstream 113258 29925734 ~ 29995516 (+) True G178859
XR_005636694.1 lncRNA upstream 150385 29956270 ~ 29958389 (+) True LOC120545430
TU242189 lncRNA downstream 9092 30124638 ~ 30125211 (+) True G178907
TU242193 lncRNA downstream 40819 30156365 ~ 30156778 (+) True G178910
TU242196 lncRNA downstream 40819 30156365 ~ 30156778 (+) False G178910
TU242166 lncRNA downstream 62442 30177988 ~ 30183476 (+) True G178896
TU242167 lncRNA downstream 62442 30177988 ~ 30183476 (+) False G178896
XM_039779706.1 mRNA upstream 20754 30061600 ~ 30088020 (+) True gnsb
XM_039779729.1 mRNA upstream 143526 29951452 ~ 29965248 (+) True il1b
XM_039779699.1 mRNA upstream 183509 29895677 ~ 29925265 (+) True LOC120545406
XM_039779060.1 mRNA upstream 225853 29846353 ~ 29882921 (+) True LOC120545067
XM_039779722.1 mRNA upstream 267069 29831363 ~ 29841705 (+) True sec14l7
XM_039779712.1 mRNA downstream 4811 30120357 ~ 30177697 (+) True LOC120545415
XM_039779717.1 mRNA downstream 4811 30120357 ~ 30177697 (+) False LOC120545415
XM_039779711.1 mRNA downstream 4811 30120357 ~ 30177697 (+) False LOC120545415
XM_039779714.1 mRNA downstream 4812 30120358 ~ 30177697 (+) False LOC120545415
XM_039779716.1 mRNA downstream 4812 30120358 ~ 30177697 (+) False LOC120545415
TU242148 other upstream 86557 30021319 ~ 30022217 (+) True G178881
TU242149 other upstream 86557 30021319 ~ 30022217 (+) False G178881
TU242091 other upstream 313460 29794144 ~ 29795314 (+) False LOC120545429
TU242100 other upstream 364699 29742623 ~ 29744075 (+) True G178845
TU241682 other upstream 1016448 29084949 ~ 29092326 (+) True G178529
XR_005636691.1 other downstream 148837 30264383 ~ 30310894 (+) True zmiz2
TU242927 other downstream 1272201 31387747 ~ 31480094 (+) True G179407
TU243294 other downstream 1963631 32079177 ~ 32099542 (+) True G179655
TU243292 other downstream 1973882 32089428 ~ 32092131 (+) False G179655
TU243298 other downstream 1973882 32089428 ~ 32099542 (+) False G179655

Expression Profile