G179407


Basic Information

Item Value
gene id G179407
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 31387747 ~ 31480094 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU242908
tgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacagGGTCTAGAGAAAAAGCACAACTCCGACCAACCAACAAGAACCACAAGTCGCCTGTCGATCTAAAGCTTCTCCTCCGCTGTcgtcttctcttcttctcttaaACACTGAtgttaagaagctttgtgctcgcggaaataaaaaaaaaggcaaaagcataaaaagataaaaatgttTACAGATGAATATATCAAAATTTGAGAATGTTGTTCAAACGTGACTTCTTCCACCTAAAACTTCAA
>TU242918
gtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacagGGTCTAGAGAAAAAGCACAACTCCGACCAACCAACAAGAACCACAAGTCGCCTGTCGATCTAAAGCTTCTCCTCCGCTGTcgtcttctcttcttctcttaaACACTGAtgttaagaagctttgtgctcgcggaaataaaaaaaaaggcaaaagcataaaaagataaaaatgttTACAGATGAATATATCAAAATTTGAGAATGTTGTTCAAACGTGACTTCTTCCACCTAAAACTTCAA
>TU242921
tgtgtgtttgtgtgtgtgtgtgtgtgacagGGTCTAGAGAAAAAGCACAACTCCGACCAACCAACAAGAACCACAAGTCGCCTGTCGATCTAAAGCTTCTCCTCCGCTGTcgtcttctcttcttctcttaaACACTGAtgttaagaagctttgtgctcgcggaaataaaaaaaaaggcaaaagcataaaaagataaaaatgttTACAGATGAATATATCAAAATTTGAGAATGTTGTTCAAACGTGACTTCTTCCACCTAAAACTTCAAGtgcaatatatttttatatttgtgaatttttttttttttttgcactagtTTTTCATATACTCTGTTGCTGTTTTATTCCATGTCTGTGCATTGTGTATTATTGTCATGATCTTACTGCTGTCA
>TU242927
ttttcatgccatgggacctttaatatcagGGCCCCATTTGACTGTTGTTTGTCTTGTGGCAAAGATTTTTTTCATGGCGTAGAGTTCAAATAGAAGTCCAACATTTTGTCTTTTGAGCTTCTTAATGTTTGACTGTtgctgtgtgctgctgctgtctctACCATCCATCCACTGGCTGTTACCAGGGCCATGGTTTTCCAGCTTCTTCCCTCCATCAACATGATGATATCAGGCTAACATGATCCAGCTACCTTCTTCAAACGCAGTTAGAGGAACGATTTGTTCAACTTCAATTAAGTTTTCTTACGTAAAGTCTGTAGAGCATCAAATGGGGATTAATCCAGCGATGAAAGTAGTCTCCAACAAATGAACTATCCCCCGTTTGATGAACGACTGATAACAGCAATCTGACAGATAAACTTTAAACAGCTTTGAAAAGGTGAAATCCAGGATCAAATTAAACATGGAGAACCGGGCCCTGCATGCTGGCCTTTCATTTTCCTGACATGATAaataaggttgtgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtctgtatgtgtctgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctgtctgtctttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtctgtgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtttgtgtctgcctgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtttgtgtctgcctgtctgtctgtttgtgtctgcctgtctgtctgtgcgtgtgtgtgtgtgt

Function

GO: NA

KEGG:

id description
ko04144 Endocytosis

RNA

RNA id representative length rna type GC content exon number start site end site
TU242908 False 294 lncRNA 0.40 2 31414278 31462608
TU242918 False 326 lncRNA 0.41 3 31414067 31462608
TU242921 False 392 lncRNA 0.35 2 31414348 31462731
TU242927 True 903 TUCP 0.45 2 31387747 31480094

Neighbor

gene id symbol gene type direction distance location
sept5b LOC103356565,LOC105913293 coding upstream 147709 31202551 ~ 31240038 (+)
acads acads coding upstream 235580 31126459 ~ 31152167 (+)
crybb1 crybb1,LOC101477459 coding upstream 264542 31115852 ~ 31123205 (+)
slc4a5b LOC102799615,LOC102199953,LOC101477060,LOC107395321,LOC102294077,LOC108245384 coding upstream 704673 30587007 ~ 30683074 (+)
scarb1 NA coding upstream 845214 30511961 ~ 30542533 (+)
LOC120546097 NA coding downstream 318137 31798231 ~ 31800033 (+)
LOC120544976 NA coding downstream 362031 31842125 ~ 31844197 (+)
LOC120545076 NA coding downstream 375886 31855980 ~ 31858839 (+)
LOC120545679 NA coding downstream 385309 31865403 ~ 31867512 (+)
LOC120545680 LOC102797342 coding downstream 389853 31869947 ~ 31873051 (+)
G179405 NA non-coding upstream 89291 31297632 ~ 31298456 (+)
G179308 NA non-coding upstream 103382 31283948 ~ 31284365 (+)
G179298 NA non-coding upstream 109409 31236575 ~ 31278338 (+)
G179293 NA non-coding upstream 144097 31189005 ~ 31243650 (+)
G179297 NA non-coding upstream 150617 31217812 ~ 31237130 (+)
G179445 NA non-coding downstream 6572 31486666 ~ 31509005 (+)
G179441 NA non-coding downstream 41787 31521881 ~ 31522378 (+)
G179458 NA non-coding downstream 88434 31568528 ~ 31757783 (+)
G179464 NA non-coding downstream 176822 31656916 ~ 31659171 (+)
G179475 NA non-coding downstream 237831 31717925 ~ 31720315 (+)
LOC120545414 LOC106676976 other upstream 1056133 30324112 ~ 30331614 (+)
zmiz2 zmiz2 other upstream 1076853 30259366 ~ 30310894 (+)
G178881 NA other upstream 1365530 30021319 ~ 30022217 (+)
LOC120545429 LOC104948058 other upstream 1591922 29793804 ~ 29795825 (+)
G178845 NA other upstream 1637452 29742623 ~ 29750295 (+)
LOC120545154 hapln1,LOC101070352,LOC100699000,LOC101480665 other downstream 85151 31565245 ~ 31653583 (+)
LOC120544927 NA other downstream 331635 31811729 ~ 31832260 (+)
LOC120545711 NA other downstream 579831 32059925 ~ 32078010 (+)
G179655 cox5b,LOC106567989,LOC106563057 other downstream 599083 32079177 ~ 32099542 (+)
LOC120545732 lage3,LOC103372999 other downstream 961916 32442010 ~ 32448815 (+)

Expression


Co-expression Network