LOC120545414 (LOC106676976)


Basic Information

Item Value
gene id LOC120545414
gene name LOC106676976
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 30324112 ~ 30331614 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU242227
GAGAGCTGATTGTTGAGGCGTTTCTTCGCTGCTCAGAgatcagctgtcaatcaaacattgTGGGCGGTACTTTGACATCTTGTCATTAGTTGTTGTGTAAATGGTTGAGTGTCTTTAGGCGGCGCTCCTTCCTGTGTCTGTTCCACTGCTCATGATGATGTTAGTTGACCTGAACTGAACATGAAAACTTCTCTGTGCTCTAAATGTTTGatgaatatttgtatcgatgtatttgtatgttgttgtgtctCATCCACTGCATGGCTCTGAAGAGAGAAAGCCCCAGACCTCCTTTATCCTGCACACTTTCttctctttatttacatttatttgttcGTTGGACCAAATGTTGTTATCATAATCAagggtaactttgggttcaacattgttggggttgagatctccaactatccagggaggtcccgggacatgtatgcatgtattgagaaaagcaacaaaaacattgaaaaaattgtaggaaaaaagagacaaaaacctCCAAAACTCTGTCGAAGAAGAACCTCAACgtcaaaagattacaaatatcagaaaaagcaacaaaaactttgggaaaaaagcctaaaaaaaggcgacaaaaactcagaaaaaagcaacaaaacagtgaaaaaaaattgtccacaaaaaacattgaaagaagcaacaaaaacctacaaaaaaaagcaacaaaatcgttgaaaaaaatggacaaaatgaCAGAAAACGGGACATAAACGTCcaaaaaagcaagaaaaacttcagaaaaagcccAGAATGGATTATAGGGTTGTAACCCCCCCATCTCCCCTGTAAATAACGCCTATAATCATAATCAATAACTCATTCTTCTCTTTTAACAGCTGAGATTCTGGTCTAACAAAGTGATTGTGTGGATGAAGTGAATCTTTATGAAATCATTGAACAAGAGtctttgaacagactttactgatgggatgtgtgaacaaactgaag
>XM_039779710.1
GTGAGACTCAGACAGTCGTTGTCACTGAGCGGTAAAATGGCgcagaaaggagttcagctggaccgggaaaccttctcttgttccatctgtctggatctactgaaggatccggtgactactccctgtggacacagctactgcatgaGCTGTATTAACAGTTTCTGGGATGAAGGGGATGAGAAGGAAACCCACAGCTGTCCTCAGTGCAGACAGAGcttcacaccgaggcctgtcctgctgaaaaacaccatgttagcagatttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctggAGATGTGGTCTGTGATTTCTGCTCTGGGAGAAAACTGAAAGCACACAAGTCCTGTCTCGTCTGTCTGGCTTCTTACTGTGAGAAACACCTTCAGCCTCATTATGATGTCGCTCCattaaagaaacacaagctggtggagccgtccaagaagctccaggagaacgtctgctctcgtcatgatgaggtgatgaagatgttctgccgtactgatcagcagcttatctgttatctctgctctgtggaggaacataaaggccacgacacagtctcagctgcagcagagagagctgagaggcagagagagctcgaggggagtcgacaaaacatccagcagagaatccaggacagagagaaagatgtgaagctgcttcaacagcaggcggaggccatcaatctctctgctgataaagcagtggaggacagcgagaagatcttcactgagctgatccgtctcctggagaaaagaagctctgatgtggagcagcaggtcagatccaGGCAGAAAAGTGAAGAGAGTCGAGTCAgagagcttcaggagaagctggagcaggagatcactgagctgaagaggagagacgctgagctgaagaaactctcacacacagaggatcacaaccagtttctacacaactacccctcactgtcaccactcagccaatcagcatccagcatccatatccgtcctctgagctgctttgaggacgtaacagcggccgtgtcagaagtcagagataaactacaggacgtcctgagagagaagaggacaaAAGTCTCACTGTCAGGGACTGAAGTGGACGTTTTACTGCcacaaccagagcccaagaccagagctggattcttaaaatattcacgtgacatcacactggatccaaacacagtaaacacacagctgttattATCCGAGGGGAACAGGAAAGTAACGTACATGAATCAACAACAGtcttattctagtcacccagacagattcactaACAGGcctcaggtcctgagtagagagagtctgactggacgttgttactgggaggtggagaggagagggagagtttttgtagcagtcgcatacaagaatatcagcagagcaggggggTCGGCTGAATGTGTATTTGGATACAATGACAAATCTTGGGCGCTAAATTGTAACAACAACAGTTATACATTTTGGTACAACAAAGTCCAAACTCCCGTCTCAGGTcctgagtcctccagagtaggagtgtacctggatcacagtgcaggtattctgtccttctacagcgtctctgaaaccatgactctcctccacagagtccagaccacattcactcagccgctcTATGCTGGACTAATGGTTTATCCTGGAGACTCTGCTGAGTTGTTTAAACTGAAATAaacagaagtcatttaagggttaaattctgtgttttaactctTCAACTTATTCAGGGTTCAACATTGAGGGTttcccgatggcccggggcaaaTAAATATAACAACCCACCTGCCTGTTGATCGTATCATAACAGACGTCATCGTTCTCTTGTCCCGTCGGAGAACGCTCCTAAATTTGAATGTGCCATTGGCCAATCAGGAACTGAGTTGGTGCTTGACAcaagatgtttttaaaaaaaaaagcttttacaCTTTTGACggttttaacattttataagTAATTCTTTacattttaggactttttttcttttacatttgacTTGTTTTCCAATGATTTcgactttataaaaaaaataatttcacatttttttcacaaGTTTTCCGAAGTTTGCCatttttttcccaatgtttttctttactttttcaatgcttttaaaaaacgttttttcAAACATTCCTCTttgaggtttaaaaaaagaaaggggccagtaaaaactgTCTCCGGACAAGTAGAAACCTTAACGTTGAACCGTGTTATTTTAGGCTCCATGTTTGTTGCTGAGAGCTGATTGTTGAGGCTTTTCTTCGCTGCTCAGAgatcagctgtcaatcaaacattgTGGGCGGTACTTTGACATCTTGTCATTAGTTGTTGTGTAAATGGTTGAGTGTCTTTAGGCGGCGCTCCTTCTTGTGTCTGTTCCACTGCTCATGATGATGTTAGTTGACCTGAACTGAACATGAAAACTTCTCTGTGCTCTAAATGTTTGatgaatatttgtatcgatgtatttgtatgttgttgtgtctCATCCACTGCATGGCTCTGAAGAGAGAAAGCCCCAGACCTCCTTTATCCTGCACACTTTCttctctttatttacatttatttgttcGTTGGACCAAATGTTGTTATCATAATCAagggtaactttgggttcaacattgttggggttgagatctccaactatccagggaggtcccgggacatgtatgcatgtattgagaaaagcaacaaaaacattgaaaaaattgtaggaaaaaagagacaaaaacctCCAAAACTCTGTCGAAGAAGAACCTCAACgtcaaaagattacaaatatcagaaaaagcaacaaaaactttgggaaaaaagcctaaaaaaaggcgacaaaaactcagaaaaaagcaac

Function

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242227 False 969 lncRNA 0.37 2 30324112 30331614
XM_039779710.1 True 2872 mRNA 0.44 1 30328389 30331260

Neighbor

gene id symbol gene type direction distance location
ppiab ppia,LOC104934128,LOC104948019 coding upstream 2109 30316459 ~ 30322003 (+)
ogdhb ogdh coding upstream 95495 30190270 ~ 30228617 (+)
LOC120545415 camk2b,LOC102196557,LOC101473593 coding upstream 146415 30120357 ~ 30177697 (+)
nudcd3 nudcd3 coding upstream 208566 30108774 ~ 30115546 (+)
gnsb gns,LOC104931705,LOC103374629 coding upstream 236092 30061600 ~ 30088020 (+)
LOC120545413 NA coding downstream 1693 30333307 ~ 30335753 (+)
LOC120545426 LOC103129635,LOC106953379,LOC106904245,LOC107386157,LOC105916632,LOC103470758,LOC100699155,LOC102206240,LOC102305468 coding downstream 7096 30338710 ~ 30344803 (+)
ddx56 ddx56 coding downstream 50367 30381981 ~ 30399109 (+)
ash2l ash2l coding downstream 118823 30450437 ~ 30466212 (+)
scarb1 NA coding downstream 180347 30511961 ~ 30542533 (+)
G178918 NA non-coding upstream 48540 30235218 ~ 30275572 (+)
G178896 NA non-coding upstream 140636 30088279 ~ 30183476 (+)
G178910 NA non-coding upstream 167334 30156365 ~ 30156778 (+)
G178907 NA non-coding upstream 198901 30124638 ~ 30125211 (+)
G178902 NA non-coding upstream 215557 30106993 ~ 30108555 (+)
G178933 NA non-coding downstream 33146 30364760 ~ 30368909 (+)
G178934 NA non-coding downstream 43200 30374814 ~ 30375165 (+)
G178950 NA non-coding downstream 92339 30423953 ~ 30430650 (+)
LOC120544906 NA non-coding downstream 244695 30576309 ~ 30577206 (+)
G178983 NA non-coding downstream 352585 30684199 ~ 30684478 (+)
zmiz2 zmiz2 other upstream 13218 30259366 ~ 30310894 (+)
G178881 NA other upstream 301895 30021319 ~ 30022217 (+)
LOC120545429 LOC104948058 other upstream 528287 29793804 ~ 29795825 (+)
G178845 NA other upstream 573817 29742623 ~ 29750295 (+)
rasgrf2a NA other upstream 656881 29601531 ~ 29667231 (+)
G179407 NA other downstream 1056133 31387747 ~ 31480094 (+)
LOC120545154 hapln1,LOC101070352,LOC100699000,LOC101480665 other downstream 1233631 31565245 ~ 31653583 (+)
LOC120544927 NA other downstream 1480115 31811729 ~ 31832260 (+)
LOC120545711 NA other downstream 1728311 32059925 ~ 32078010 (+)
G179655 cox5b,LOC106567989,LOC106563057 other downstream 1747563 32079177 ~ 32099542 (+)

Expression


Co-expression Network