RNA id: XM_039779710.1


Basic Information

Item Value
RNA id XM_039779710.1
length 2872
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC120545414
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 30324112 ~ 30331614 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAGACTCAGACAGTCGTTGTCACTGAGCGGTAAAATGGCgcagaaaggagttcagctggaccgggaaaccttctcttgttccatctgtctggatctactgaaggatccggtgactactccctgtggacacagctactgcatgaGCTGTATTAACAGTTTCTGGGATGAAGGGGATGAGAAGGAAACCCACAGCTGTCCTCAGTGCAGACAGAGcttcacaccgaggcctgtcctgctgaaaaacaccatgttagcagatttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctggAGATGTGGTCTGTGATTTCTGCTCTGGGAGAAAACTGAAAGCACACAAGTCCTGTCTCGTCTGTCTGGCTTCTTACTGTGAGAAACACCTTCAGCCTCATTATGATGTCGCTCCattaaagaaacacaagctggtggagccgtccaagaagctccaggagaacgtctgctctcgtcatgatgaggtgatgaagatgttctgccgtactgatcagcagcttatctgttatctctgctctgtggaggaacataaaggccacgacacagtctcagctgcagcagagagagctgagaggcagagagagctcgaggggagtcgacaaaacatccagcagagaatccaggacagagagaaagatgtgaagctgcttcaacagcaggcggaggccatcaatctctctgctgataaagcagtggaggacagcgagaagatcttcactgagctgatccgtctcctggagaaaagaagctctgatgtggagcagcaggtcagatccaGGCAGAAAAGTGAAGAGAGTCGAGTCAgagagcttcaggagaagctggagcaggagatcactgagctgaagaggagagacgctgagctgaagaaactctcacacacagaggatcacaaccagtttctacacaactacccctcactgtcaccactcagccaatcagcatccagcatccatatccgtcctctgagctgctttgaggacgtaacagcggccgtgtcagaagtcagagataaactacaggacgtcctgagagagaagaggacaaAAGTCTCACTGTCAGGGACTGAAGTGGACGTTTTACTGCcacaaccagagcccaagaccagagctggattcttaaaatattcacgtgacatcacactggatccaaacacagtaaacacacagctgttattATCCGAGGGGAACAGGAAAGTAACGTACATGAATCAACAACAGtcttattctagtcacccagacagattcactaACAGGcctcaggtcctgagtagagagagtctgactggacgttgttactgggaggtggagaggagagggagagtttttgtagcagtcgcatacaagaatatcagcagagcaggggggTCGGCTGAATGTGTATTTGGATACAATGACAAATCTTGGGCGCTAAATTGTAACAACAACAGTTATACATTTTGGTACAACAAAGTCCAAACTCCCGTCTCAGGTcctgagtcctccagagtaggagtgtacctggatcacagtgcaggtattctgtccttctacagcgtctctgaaaccatgactctcctccacagagtccagaccacattcactcagccgctcTATGCTGGACTAATGGTTTATCCTGGAGACTCTGCTGAGTTGTTTAAACTGAAATAaacagaagtcatttaagggttaaattctgtgttttaactctTCAACTTATTCAGGGTTCAACATTGAGGGTttcccgatggcccggggcaaaTAAATATAACAACCCACCTGCCTGTTGATCGTATCATAACAGACGTCATCGTTCTCTTGTCCCGTCGGAGAACGCTCCTAAATTTGAATGTGCCATTGGCCAATCAGGAACTGAGTTGGTGCTTGACAcaagatgtttttaaaaaaaaaagcttttacaCTTTTGACggttttaacattttataagTAATTCTTTacattttaggactttttttcttttacatttgacTTGTTTTCCAATGATTTcgactttataaaaaaaataatttcacatttttttcacaaGTTTTCCGAAGTTTGCCatttttttcccaatgtttttctttactttttcaatgcttttaaaaaacgttttttcAAACATTCCTCTttgaggtttaaaaaaagaaaggggccagtaaaaactgTCTCCGGACAAGTAGAAACCTTAACGTTGAACCGTGTTATTTTAGGCTCCATGTTTGTTGCTGAGAGCTGATTGTTGAGGCTTTTCTTCGCTGCTCAGAgatcagctgtcaatcaaacattgTGGGCGGTACTTTGACATCTTGTCATTAGTTGTTGTGTAAATGGTTGAGTGTCTTTAGGCGGCGCTCCTTCTTGTGTCTGTTCCACTGCTCATGATGATGTTAGTTGACCTGAACTGAACATGAAAACTTCTCTGTGCTCTAAATGTTTGatgaatatttgtatcgatgtatttgtatgttgttgtgtctCATCCACTGCATGGCTCTGAAGAGAGAAAGCCCCAGACCTCCTTTATCCTGCACACTTTCttctctttatttacatttatttgttcGTTGGACCAAATGTTGTTATCATAATCAagggtaactttgggttcaacattgttggggttgagatctccaactatccagggaggtcccgggacatgtatgcatgtattgagaaaagcaacaaaaacattgaaaaaattgtaggaaaaaagagacaaaaacctCCAAAACTCTGTCGAAGAAGAACCTCAACgtcaaaagattacaaatatcagaaaaagcaacaaaaactttgggaaaaaagcctaaaaaaaggcgacaaaaactcagaaaaaagcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242205 lncRNA upstream 52817 30235218 ~ 30275572 (+) True G178918
TU242167 lncRNA upstream 144913 30177988 ~ 30183476 (+) False G178896
TU242230 lncRNA downstream 33500 30364760 ~ 30368909 (+) True G178933
TU242231 lncRNA downstream 43554 30374814 ~ 30375165 (+) True G178934
TU242247 lncRNA downstream 92693 30423953 ~ 30430650 (+) True G178950
XR_005636600.1 lncRNA downstream 245049 30576309 ~ 30577206 (+) True LOC120544906
TU242323 lncRNA downstream 352939 30684199 ~ 30684478 (+) True G178983
XM_039779733.1 mRNA upstream 6386 30316459 ~ 30322003 (+) True ppiab
XM_039779694.1 mRNA upstream 17634 30264383 ~ 30310755 (+) False zmiz2
XM_039779695.1 mRNA upstream 17671 30259366 ~ 30310718 (+) False zmiz2
XM_039779696.1 mRNA upstream 17671 30260700 ~ 30310718 (+) False zmiz2
XM_039779697.1 mRNA upstream 17671 30264383 ~ 30310718 (+) False zmiz2
XM_039779708.1 mRNA downstream 2047 30333307 ~ 30335753 (+) True LOC120545413
XM_039779732.1 mRNA downstream 7450 30338710 ~ 30344803 (+) True LOC120545426
XM_039779707.1 mRNA downstream 50721 30381981 ~ 30399109 (+) True ddx56
XM_039779704.1 mRNA downstream 119177 30450437 ~ 30466212 (+) True ash2l
XM_039779705.1 mRNA downstream 119177 30450437 ~ 30466212 (+) False ash2l
XR_005636691.1 other upstream 17495 30264383 ~ 30310894 (+) True zmiz2
TU242148 other upstream 306172 30021319 ~ 30022217 (+) True G178881
TU242149 other upstream 306172 30021319 ~ 30022217 (+) False G178881
TU242091 other upstream 533075 29794144 ~ 29795314 (+) False LOC120545429
TU242100 other upstream 584314 29742623 ~ 29744075 (+) True G178845
TU242927 other downstream 1056487 31387747 ~ 31480094 (+) True G179407
TU243294 other downstream 1747917 32079177 ~ 32099542 (+) True G179655
TU243292 other downstream 1758168 32089428 ~ 32092131 (+) False G179655
TU243298 other downstream 1758168 32089428 ~ 32099542 (+) False G179655
TU243411 other downstream 2110795 32442055 ~ 32448815 (+) True LOC120545732

Expression Profile