RNA id: XM_039779697.1


Basic Information

Item Value
RNA id XM_039779697.1
length 2800
RNA type mRNA
GC content 0.60
exon number 20
gene id zmiz2
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 30259366 ~ 30310894 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCGTTGGACTGcgacactagctagctagccgctgAGCTAGCTAACCGTCTACAACCAAGCGGCTCTTCATCGTTCGTCTGGCAGCCGGAGCAGGCAAAAGGGCTGCATCTTAAGTACAGTGGGGGCTCTCTGATGATCCCCCCGTTCATCCGAtgaaccacctcaactccatGAAACCTTCCCTGCCTCCCAATCCACAAAgCGACGGCCCCTTCCTGAATGACCCAGTCTCCTGGCAACCAGGCACCAATCAGCACCCAGGATCTCTCTCTGTAGTAACCACAGTGTGGGGCGTGACCAATCCCACACACAGTCAGGTGTTTGGGGCACCCATGGGTCCGGGTGAGGGCTCTGGCGGTCACATGATGCCCGGCGGCAGCCCCGGTATGGGTCCTGGCATGGGCTCCCAGTATATGGGCCAGCAGTCGTACGGAGACGCCATCTCTAAGGGCTACGGCCAGCCGGTCATGTACGGACGTCCCAGTGGCGCTTACAACCAGTCCTCTGGCTACGGTGGAAGTTACTCTGGTAACAGTGGAGGTGCCGGCATGGGCGTTCGTCCTCCCTCAGACTTCACTCAGGCTGCAGCCGCTGCCGTTGCCGCCGCCGCTGCCACGGCAACTGCCACTGCTACGGCAACTGTTGCGGCAATACAGGAGAAGCAGAACCAGGAGATGAACTATGGCCAGATGGGTGGAGCATCCTCTTACAGCACCCAGTTCCTGTCTCATGCGGGCCCCCGCGGCCCTCCAGGGATGGTCTCTTCCAGGCCGGGACCTCCACCGCCCGGCGGAGGCCTGTATCCTTCTCACCCCGCCCAGGCTCAGAAGATGCCCCAGCACGGAGGTTATCCTGGGCAACAGCAGGGGCTCAAACGGCCTTTCCATTCAGAGGGTTTTCCAGTGCAGCAGTACGGCTCCGGTGGGATGTCGGGGTACCCTACCCAGCCTCTGCAGTACCCCACTGGTCCACAGCAGCGATGCCCCCCCTCACCCTCTTACCCCTCCAGTCGGATGCCTCTCATGGGGCAGTACACTTCTGGATCACACAACCCGGCACAGTTCCCCCCTGGAGCCGGCCAGCCCAATCCTCCACAGTATTATAAGTCCGAGCCGTTCAACGGTCAGGGCAGTCTGCCACCTGGAGGAGCCGGAGGATACAACGCCTTCACGCAGGCTGCAGTCAACGGGCCAGGTCGGGGTGGAGTGATGCCCGGGTATCCCAGCTCCCCGATGGGAGGGAATCCCACGCCTCCGATGACACCCGGGACGTCCATACCTCCCTACCTGTCCCCGGGCCAGGACACGAAACCCCCGTACCTCCCACCGGACACCAAACCCAACATCAACACCCAGCAGGTCTCTACAGGTAACCCGAGCGACGACCTGCGCCTGACGTTCCCGGTACGAGACGGCGTGGTGTTGGAGCCGTTCAGACTGGAGCACAACCTGGCCGTCAGTAACCACGCCTTCCAGCTGAGAGACTCCGTCTACAAAACGCTCATGTTGAGACCGGATCTGGAGTTGCAGTTCAAGTGTTACCACCACGAGGACAGACAAATGAACACTAACTGGCCTGCCTCTGTTCAAGTGAGCGTCAATGCAACTCCTCTGTGCATTGAAAGAGGGGACAACAAAACCTCCCACAAGCCCTTGTACCTAAAGCCAGTGTGTCAACCGGGACGTAACACCGTACAGATCACAGTGACCGCCTGCTGTTGTTCCCACCTGTTTGTGTTACAGTTGGTCCACCGGCCGTCGGTCCGGTCCGTCCTGCAGGGTCTGATGAAAAAGAGACTCCTGCCGGCCGAGCACTGCATCACTAAGAtaaAGAGAAATTTCAATAACGGCACCATCCCCGGGACCCCTGGGCTGAACGGAGAGGACGGCGTAGAGCAGACGGCGATCAAAGTTTCCCTTAAATGCCCGATCACGTTCAGACGAATCCAGCTGCCAGCCAGAGGGCACGACTGCagacacatacagTGTTTCGACCTGGAGTCCTATTTGCAGCTGAACTGTGAAAGAGGGACCTGGAGATGTCCTGTGTGCAATAAAACAGCTTTGCTAGAAGGGCTGGAGGTGGACCAGTACATGCTGGGGATTCTCGTCTACATCCACAATTCTGACTATGAGGAGATCACCATCGACCCGGTGTGCGGTTGGAGGCCAGTTCCAGTCAAACCCGACCTGCACATAAAGGAGGAGCCAGACGGTCCGGTCCTGAAGCGCTGCCGAACAGTCAGCCCGAGTCATATGGTCCTGCCTAATGTGATGGAGATGATCGCCGCTCTGGGCCCGGCGTCGTCCCCCTACCACAGTCTGACTGCAGGTGGCCGCAACACGCCCGACTACAACAGGCCAGGGAGCCAGGGATTCTCCAGCCAGGCGGGATTCACGGACTTCCCCAACACTCCTGGCACCCCGACACTCGGAGAGTACGCCTCCTCTGGACCTCCACTCCCCTATCAGTCTGAGCAGACGTCTCATTCTGGGCGGATGGACCACGGCCACAACATCCTCCAGCAGCACGGTTCAGCCGTTCACGGCAATCCCAGTCTCGGCGACGCCGGCAGCCCGCTGCCGCAGCGGAACGTCAATTCCCAGAGTTCCCGGCTGCAGAGCGAAGGCTCCTTCGGTCTGGGAGGCCCCGGAGCGCCCGGAGGAGAGGGGCCCGATCACGCGCTAGATCTTCTTCCTGAGCTGACCAACCCGGACGAGCTGCTGTCCTACCTGGGCCCCCCCGACCTGCCCAACAACAGCAGCGATGACCTGCTGTCTCTGTTCGAGAACAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242166 lncRNA upstream 80907 30177988 ~ 30183476 (+) True G178896
TU242227 lncRNA downstream 13394 30324112 ~ 30331614 (+) False LOC120545414
TU242230 lncRNA downstream 54042 30364760 ~ 30368909 (+) True G178933
TU242231 lncRNA downstream 64096 30374814 ~ 30375165 (+) True G178934
TU242247 lncRNA downstream 113235 30423953 ~ 30430650 (+) True G178950
XR_005636600.1 lncRNA downstream 265591 30576309 ~ 30577206 (+) True LOC120544906
XM_039779692.1 mRNA upstream 35766 30192551 ~ 30228617 (+) True ogdhb
XM_039779693.1 mRNA upstream 36467 30190270 ~ 30227916 (+) False ogdhb
XM_039779715.1 mRNA upstream 86686 30120358 ~ 30177697 (+) False LOC120545415
XM_039779733.1 mRNA downstream 5741 30316459 ~ 30322003 (+) True ppiab
XM_039779710.1 mRNA downstream 17671 30328389 ~ 30331260 (+) True LOC120545414
XM_039779708.1 mRNA downstream 22589 30333307 ~ 30335753 (+) True LOC120545413
XM_039779732.1 mRNA downstream 27992 30338710 ~ 30344803 (+) True LOC120545426
XM_039779707.1 mRNA downstream 71263 30381981 ~ 30399109 (+) True ddx56
TU242148 other upstream 242166 30021319 ~ 30022217 (+) True G178881
TU242149 other upstream 242166 30021319 ~ 30022217 (+) False G178881
TU242091 other upstream 469069 29794144 ~ 29795314 (+) False LOC120545429
TU242100 other upstream 520308 29742623 ~ 29744075 (+) True G178845
TU241682 other upstream 1172057 29084949 ~ 29092326 (+) True G178529
TU242927 other downstream 1077029 31387747 ~ 31480094 (+) True G179407
TU243294 other downstream 1768459 32079177 ~ 32099542 (+) True G179655
TU243292 other downstream 1778710 32089428 ~ 32092131 (+) False G179655
TU243298 other downstream 1778710 32089428 ~ 32099542 (+) False G179655
TU243411 other downstream 2131337 32442055 ~ 32448815 (+) True LOC120545732

Expression Profile