RNA id: XM_039779732.1


Basic Information

Item Value
RNA id XM_039779732.1
length 733
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC120545426
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 30338710 ~ 30344803 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGCTCACTTAAATACGGAAGTGTATCCTGTCTGGCACGCTGTCCATACAAGAGTATCTTTCCCACTCTAAAGCACAAGCTCGTTGAGAAACATGGCGAAACCCAGAGTTTTCTTCGACATCACTATTAATGGAGCTAAGACTGGCAGGATTGTAATGGAGctcCGGGCTGATGTGGTCCCAAAGACTGCAGAAAATTTCCGTGCTTTGTGCACTGGGGAGAAGGGTTTTGGCTACAAGGGCTCCACGTTCCACCGTATCATCCCTAAATTCATGTGCCAGGGCGGGGACTTCACTAGGCACGATGGAACTGGAGGCAAATCCATCTACGGGGAGAAGTTTGCTGATGAGAACTTCCAGCTGAAGCACACAGGCCCGGGCATCCTGTCCATGGCTAATGCCGGGCCCAACACCAACGGATCCCAGTTCTTCCTCTGCACAGAAAAAACTAGCTGGCTGGACGGGAAGCACGTGGTGTTCGGCTGTGTTGTGGAGGGCATGGATGTTGTCAAGAAAATGGAGAGCTACGGCACAGACGGCGGCAAACCAAAAGACAAAGCCAAGGTTGTCATCGCCGACTGTGGCGAGCTAAAATAGTTTGGGCTTGTTCTCCCGTAAGATTTATTTGTTCGTGTACCATTTTGTACCTTCTAATCGGTTCTCTGAGGACATTTGTTAACACAATCTGAATAAAATGTTGCTGATGGTGTAAATAAAGCAACTTGAAAAGCTAA

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K01802 E5.2.1.8; peptidylprolyl isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242227 lncRNA upstream 7096 30324112 ~ 30331614 (+) False LOC120545414
TU242205 lncRNA upstream 63138 30235218 ~ 30275572 (+) True G178918
TU242171 lncRNA upstream 155234 30177988 ~ 30183476 (+) False G178896
TU242230 lncRNA downstream 19957 30364760 ~ 30368909 (+) True G178933
TU242231 lncRNA downstream 30011 30374814 ~ 30375165 (+) True G178934
TU242247 lncRNA downstream 79150 30423953 ~ 30430650 (+) True G178950
XR_005636600.1 lncRNA downstream 231506 30576309 ~ 30577206 (+) True LOC120544906
TU242323 lncRNA downstream 339396 30684199 ~ 30684478 (+) True G178983
XM_039779708.1 mRNA upstream 2957 30333307 ~ 30335753 (+) True LOC120545413
XM_039779710.1 mRNA upstream 7450 30328389 ~ 30331260 (+) True LOC120545414
XM_039779733.1 mRNA upstream 16707 30316459 ~ 30322003 (+) True ppiab
XM_039779694.1 mRNA upstream 27955 30264383 ~ 30310755 (+) False zmiz2
XM_039779696.1 mRNA upstream 27992 30260700 ~ 30310718 (+) False zmiz2
XM_039779707.1 mRNA downstream 37178 30381981 ~ 30399109 (+) True ddx56
XM_039779704.1 mRNA downstream 105634 30450437 ~ 30466212 (+) True ash2l
XM_039779705.1 mRNA downstream 105634 30450437 ~ 30466212 (+) False ash2l
XM_039779064.1 mRNA downstream 167158 30511961 ~ 30542533 (+) True scarb1
XM_039779155.1 mRNA downstream 242204 30587007 ~ 30683074 (+) False slc4a5b
XR_005636691.1 other upstream 27816 30264383 ~ 30310894 (+) True zmiz2
TU242148 other upstream 316493 30021319 ~ 30022217 (+) True G178881
TU242149 other upstream 316493 30021319 ~ 30022217 (+) False G178881
TU242091 other upstream 543396 29794144 ~ 29795314 (+) False LOC120545429
TU242100 other upstream 594635 29742623 ~ 29744075 (+) True G178845
TU242927 other downstream 1042944 31387747 ~ 31480094 (+) True G179407
TU243294 other downstream 1734374 32079177 ~ 32099542 (+) True G179655
TU243292 other downstream 1744625 32089428 ~ 32092131 (+) False G179655
TU243298 other downstream 1744625 32089428 ~ 32099542 (+) False G179655
TU243411 other downstream 2097252 32442055 ~ 32448815 (+) True LOC120545732

Expression Profile