RNA id: XM_039779708.1


Basic Information

Item Value
RNA id XM_039779708.1
length 2447
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC120545413
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 30333307 ~ 30335753 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGCAGATTGGTGTAACCAACACGCTGCTGAAGTACAACAGAGTATCACTGCTGTTTTTAGATCAGAGCTCAGACTAGTTCCACTTCTCAGGAAGTGAGACTCAGACAGTCGTTGTCACTGAGCGGTAAAATGGCgcagaaaggagttcagctggaccgggaaaccttctcttgttccatctgtctggatctactgaaggatccggtgactactccctgtggacacagctactgcatgaactgtattaacAGTTTCTGGGATGAAGGGGATGAGAAGGAAACCCACAGCTGTCCTCAGTGCAGACAGAGcttcacaccgaggcctgtcctgctgaaaaacaccatgttagcagatttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctggAGATGTGGTCTGTGATTTCTGCACCGGGAGAAAACTGAAAGCACACAAGTCCTGTCTCGTCTGTCTGGCTTCTTACTGTGAGAAACACCTTCAGCCTCATTATGATGTCGCTCCattaaagaaacacaagctggtggagccgtccaagaagctccaggagaacgtctgctctcgtcatgatgaggtgatgaagatgttctgccgtaatgatcagcagcttatctgttatctctgctctgtggaggaacataaaggccacgacacagtctcagctgcagcagagagagctgagaggcagagagagctcgaggggagtcgacaaaacatccagcagagaatccaggacagagagaaagatgtgaagctgcttcaacagcaggcggaggccatcaatctctctgctgataaaacagtggaggacagcgagaagatcttcactgagctgatccgtctcctggagaaaagaagctctgatgtggagcagcaggtcagatccaGGCAGAAAAGTGAAGAGAGTCGAGTCAgagagcttcaggagaagctggagcaggagatcactgagctgaagaggagagacgctgagctgaagaagctctcgcacacagaggatcacaaccagtttctacacaactacccctcactgtcaccactcagccaatcagcatccagcatccatatccgtcctctgagctgctttgaggacgtgacagcggccgtgtcagaagtcagagataaactacaggacgtcctgagagagaagaggacaaacatctcactgacagggactgaagtggacgttttactgccacaaccacaaccagagcccaagaccagagctggattcttaaaatattcacgtgacatcacactggatccaaacacagcacacacacggctgttattatctgaggggaacaggaaagTAACATTCATGAATCAACAACAGtcttattctagtcacccagacagattcactaactggtctcaggtcctgagtagagagagtctgactggacgttgttactgggaggtggagaggagaggaggaggagtttatgtagcagtcgcatacaagaaCATCATCAGAGCAGGGGGGTCGGCTGAATGTGGATTTGGATACAATGACAAATCTTGGGCGTTATATTGCAACAACAGTTATATATTTTGGTACAACAATGTCCACACTCATGTCTCAGGTcctgagtcctccagagtaggagtgtacctggatcacagtgcaggtatcctgtccttctacagcgtctctgaaaccatgactctcctccacagagtccagaccacattcactcagccgctcTATGCTGGACTAATGGTTCATTATTCTGGAgactctgctgagttgtgtaaactgaaatagacagaagtcatttaagggttaaattctgtgttttaactctTCAACTTATTCAGGGTTCAACAACAAGGGTTTCCTGATGGCCCGGGGCAAATAAAACACCACATGGGGCAAATAAATATAACAACCCACCTGCCTGACAcgagatgtttaaaaaaaaaaaaaagcttttacaCTTTTGACGGTTTCGAACATTTTCCAAGTAATTTTTTACGTTTTAggacttttttcttttacatttgacTTGTTTTCCAATGACTTCGactttataaaaaaatgttttttcacgtttttttcacagtttttccgaagtttgacatgtttttcccaatgtttttctttactttttcaatgcttttaaaaaaaacgttttttcaAACATTCCTCTttgaggtttaaaaaaagaaaggggccagtaaaaactgTCTCCGGACAAGTAGAAACCTTCACGTTGAACCGTGTTATTTTAGGCTCCATGTTTGTTGTTTAGAGCTGAttgtttatgtctttttttttatgtttttgttgcttttatcaatgttttttttgtcagtttttcaacatttctttttttgagaTGACCATcacctgttgtttttttcagccAACATTTCCTCTCTGAGACAATAAATATTAAGCTAAAACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242227 lncRNA upstream 1693 30324112 ~ 30331614 (+) False LOC120545414
TU242205 lncRNA upstream 57735 30235218 ~ 30275572 (+) True G178918
TU242167 lncRNA upstream 149831 30177988 ~ 30183476 (+) False G178896
TU242230 lncRNA downstream 29007 30364760 ~ 30368909 (+) True G178933
TU242231 lncRNA downstream 39061 30374814 ~ 30375165 (+) True G178934
TU242247 lncRNA downstream 88200 30423953 ~ 30430650 (+) True G178950
XR_005636600.1 lncRNA downstream 240556 30576309 ~ 30577206 (+) True LOC120544906
TU242323 lncRNA downstream 348446 30684199 ~ 30684478 (+) True G178983
XM_039779710.1 mRNA upstream 2047 30328389 ~ 30331260 (+) True LOC120545414
XM_039779733.1 mRNA upstream 11304 30316459 ~ 30322003 (+) True ppiab
XM_039779694.1 mRNA upstream 22552 30264383 ~ 30310755 (+) False zmiz2
XM_039779695.1 mRNA upstream 22589 30259366 ~ 30310718 (+) False zmiz2
XM_039779732.1 mRNA downstream 2957 30338710 ~ 30344803 (+) True LOC120545426
XM_039779707.1 mRNA downstream 46228 30381981 ~ 30399109 (+) True ddx56
XM_039779704.1 mRNA downstream 114684 30450437 ~ 30466212 (+) True ash2l
XM_039779705.1 mRNA downstream 114684 30450437 ~ 30466212 (+) False ash2l
XM_039779064.1 mRNA downstream 176208 30511961 ~ 30542533 (+) True scarb1
XR_005636691.1 other upstream 22413 30264383 ~ 30310894 (+) True zmiz2
TU242148 other upstream 311090 30021319 ~ 30022217 (+) True G178881
TU242149 other upstream 311090 30021319 ~ 30022217 (+) False G178881
TU242091 other upstream 537993 29794144 ~ 29795314 (+) False LOC120545429
TU242100 other upstream 589232 29742623 ~ 29744075 (+) True G178845
TU242927 other downstream 1051994 31387747 ~ 31480094 (+) True G179407
TU243294 other downstream 1743424 32079177 ~ 32099542 (+) True G179655
TU243292 other downstream 1753675 32089428 ~ 32092131 (+) False G179655
TU243298 other downstream 1753675 32089428 ~ 32099542 (+) False G179655
TU243411 other downstream 2106302 32442055 ~ 32448815 (+) True LOC120545732

Expression Profile