LOC120544906


Basic Information

Item Value
gene id LOC120544906
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 30576309 ~ 30577206 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636600.1
TAATATGTAATGTTCGATATGAATGAATTGTACTAAATCAAATACTGTTACTCGTTAACATGATGGTTAGTGTCCATCATGCTTTTGGATTCTGCATCAGACaacttttaaaaatagctaatgttagctagcgttagctaacattagctagcgttagctagcagtaacAGTCTAAGAATATGGTACAGATGAAGTTGGAAATGTTTTGGCAAGGAAATTATTGGATATGACTGAATTTCCATTTGTAGTTGCATTATAGCTTTTGGATTTTGCTGAGGACAACTTTTTGAATTCGGtcatgttagctaatgctagctaacgttagctagcgctagtcTTAGCCTAAAAATCCATTTTGAACTGATGTTTGGCAAGGATGTGACAGTATTTGTTGCTGTAATTGTGTTGTAATGTGTTTGTAGAGAGGAAAATGCCAGGCGgagagggaagaaaagagaTCACCTGCCGGAGGGACTGAAGCAAGTAAAAAGatgctCTTACACAGCAGATGGGGACAGCCGCCGTCACCCAATTTAATTTTGCCCAGGCCGTGCAACAGTTGCTGCACTATGCGTCAGACCGGGCAGGATGGACTGGACGACAAAGCAGTCAGACGTCAGAGGACCATGAACTGTAACTATGCTAAAGaggacaaataatgaaataagaggctaataaaatgaatttgtttttaccttAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636600.1 True 701 lncRNA 0.39 2 30576309 30577206

Neighbor

gene id symbol gene type direction distance location
scarb1 NA coding upstream 33776 30511961 ~ 30542533 (+)
ash2l ash2l coding upstream 110097 30450437 ~ 30466212 (+)
ddx56 ddx56 coding upstream 177200 30381981 ~ 30399109 (+)
LOC120545426 LOC103129635,LOC106953379,LOC106904245,LOC107386157,LOC105916632,LOC103470758,LOC100699155,LOC102206240,LOC102305468 coding upstream 231506 30338710 ~ 30344803 (+)
LOC120545413 NA coding upstream 240556 30333307 ~ 30335753 (+)
slc4a5b LOC102799615,LOC102199953,LOC101477060,LOC107395321,LOC102294077,LOC108245384 coding downstream 9801 30587007 ~ 30683074 (+)
crybb1 crybb1,LOC101477459 coding downstream 538646 31115852 ~ 31123205 (+)
acads acads coding downstream 549253 31126459 ~ 31152167 (+)
sept5b LOC103356565,LOC105913293 coding downstream 625345 31202551 ~ 31240038 (+)
mctp1b LOC103356564,LOC102203739,LOC101478578,LOC102777952 coding downstream 725939 31303145 ~ 31402967 (+)
G178950 NA non-coding upstream 145659 30423953 ~ 30430650 (+)
G178934 NA non-coding upstream 201144 30374814 ~ 30375165 (+)
G178933 NA non-coding upstream 207400 30364760 ~ 30368909 (+)
G178918 NA non-coding upstream 300737 30235218 ~ 30275572 (+)
G178910 NA non-coding upstream 419531 30156365 ~ 30156778 (+)
G178983 NA non-coding downstream 106993 30684199 ~ 30684478 (+)
G178984 ubb,UBC,LOC104949107,LOC104616321,LOC107588961,LOC107553588,LOC100135966 non-coding downstream 107670 30684876 ~ 30688108 (+)
G178996 NA non-coding downstream 208092 30785298 ~ 30785695 (+)
G179236 NA non-coding downstream 290812 30868018 ~ 30869258 (+)
G179250 NA non-coding downstream 381374 30958580 ~ 30958817 (+)
LOC120545414 LOC106676976 other upstream 244695 30324112 ~ 30331614 (+)
zmiz2 zmiz2 other upstream 265415 30259366 ~ 30310894 (+)
G178881 NA other upstream 554092 30021319 ~ 30022217 (+)
LOC120545429 LOC104948058 other upstream 780484 29793804 ~ 29795825 (+)
G178845 NA other upstream 826014 29742623 ~ 29750295 (+)
G179407 NA other downstream 810541 31387747 ~ 31480094 (+)
LOC120545154 hapln1,LOC101070352,LOC100699000,LOC101480665 other downstream 988039 31565245 ~ 31653583 (+)
LOC120544927 NA other downstream 1234523 31811729 ~ 31832260 (+)
LOC120545711 NA other downstream 1482719 32059925 ~ 32078010 (+)
G179655 cox5b,LOC106567989,LOC106563057 other downstream 1501971 32079177 ~ 32099542 (+)

Expression


Co-expression Network