crybb1 (crybb1,LOC101477459)


Basic Information

Item Value
gene id crybb1
gene name crybb1,LOC101477459
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 31115852 ~ 31123205 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780197.1
TCTATTGTGCTGTGAGCCTCTACGTTTGGCCTTTGCCAGAGTATAAAAGCTTGGGGTCGAGCGTTGGAGGCACCAGCACGAGCCAGCCTCCCACACACGGCACTGCAAGCTTTACTAACGCAGACTCTCCTGAAGCCCCTCACCATGTCTCAGACCGCCAAGTCCGCCTCCAGCCAGGGCACCGACGCCAAGGACAAGGGAGCCCCCGCCCCCGCTGCCTCCAGCAAGGCCACCAAGACCGGAGAGCCCGGCATGGGATCCTACAGAATCATGATGTTCGACCAGGAGAACTTCCAGGGCAGGATGATCGAGGTCCAGAATGAGTGTATGAACGTGTGTGACCGTGGCATGGATAGAGTGCGTAGTATCATTGTGGAGTGCGGCCCCTTTGTTGCCTATGAGCAGACTAACTTCCGTGGGGAGATGTTCATCCTGGAGAAGGGAGAGTATCCTCGCTGGGACACCTGGAGCAACTCCTACCGCAGTGACTGCCTCATGTCCCTCAGGCCCGTCCGCATGgACAGCATGGAGCACAAGATCTGCCTGTATGAGCTCTCCGACTTCAAGGGCAACAAGATGGAGATCCAGGAGGATGATGTGCCAACCCTCTGGGCGCACGGCTTCTGTGACAGAGTGGGCAGCGTGAGGGTCCCTGGAGGAGCCTGGGTGGGTTACCAGTACCCCGGATACAGAGGCTACCAGTACCTGTTTGAGTGCGGTGACTACAGACACTACAACGACTTCTCTGCCTACCAGCCCCAGATCCAGTCCATGCGTCGTATCAGGGAcatgcagttccaccagagagGATGCTTCACCTTCACCTCCGCCAGCAAGTGAATGATATGACACCCACTGGCCGCCTGGTGCTGTCGTAGCCACGCAGCCCTCTCAGCCTTTTTATTTCTCCAAACGCCCATCCTTTCCTAaatccccaccaccaccaccatcatcatcgcTCCATCCCAAAGGAAAGACAGAATGAGAGCAAATAAACGGGACAACGATCACTGACTTTTTATGGtgctaaaaaataaacatgttgtTAAAAACCTGAAA

Function

symbol description
crybb1 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 17 multiple types. Orthologous to human CRYBB1 (crystallin beta B1).

NR:

description
PREDICTED: beta-crystallin B1

GO: NA

KEGG:

id description
K23482 CRYB; beta-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780197.1 True 1059 mRNA 0.55 6 31115852 31123205

Neighbor

gene id symbol gene type direction distance location
slc4a5b LOC102799615,LOC102199953,LOC101477060,LOC107395321,LOC102294077,LOC108245384 coding upstream 432778 30587007 ~ 30683074 (+)
scarb1 NA coding upstream 573319 30511961 ~ 30542533 (+)
ash2l ash2l coding upstream 649640 30450437 ~ 30466212 (+)
ddx56 ddx56 coding upstream 716743 30381981 ~ 30399109 (+)
LOC120545426 LOC103129635,LOC106953379,LOC106904245,LOC107386157,LOC105916632,LOC103470758,LOC100699155,LOC102206240,LOC102305468 coding upstream 771049 30338710 ~ 30344803 (+)
acads acads coding downstream 3254 31126459 ~ 31152167 (+)
sept5b LOC103356565,LOC105913293 coding downstream 79346 31202551 ~ 31240038 (+)
mctp1b LOC103356564,LOC102203739,LOC101478578,LOC102777952 coding downstream 179940 31303145 ~ 31402967 (+)
LOC120545075 LOC103356563,LOC102778235,LOC100706525,LOC101479232,LOC102204790,LOC107394700 coding downstream 304962 31428167 ~ 31458606 (+)
LOC120546097 NA coding downstream 675026 31798231 ~ 31800033 (+)
LOC120545659 cryba4,LOC106563090,LOC106568369 non-coding upstream 14458 31087989 ~ 31101394 (+)
G179262 NA non-coding upstream 70098 31045248 ~ 31045754 (+)
G179250 NA non-coding upstream 157035 30958580 ~ 30958817 (+)
G179236 NA non-coding upstream 246594 30868018 ~ 30869258 (+)
G178996 NA non-coding upstream 330157 30785298 ~ 30785695 (+)
G179284 NA non-coding downstream 48598 31171803 ~ 31173196 (+)
G179293 NA non-coding downstream 65800 31189005 ~ 31243650 (+)
G179297 NA non-coding downstream 94607 31217812 ~ 31237130 (+)
G179288 NA non-coding downstream 101621 31224826 ~ 31226354 (+)
G179298 NA non-coding downstream 113370 31236575 ~ 31278338 (+)
LOC120545414 LOC106676976 other upstream 784238 30324112 ~ 30331614 (+)
zmiz2 zmiz2 other upstream 804958 30259366 ~ 30310894 (+)
G178881 NA other upstream 1093635 30021319 ~ 30022217 (+)
LOC120545429 LOC104948058 other upstream 1320027 29793804 ~ 29795825 (+)
G178845 NA other upstream 1365557 29742623 ~ 29750295 (+)
G179407 NA other downstream 264542 31387747 ~ 31480094 (+)
LOC120545154 hapln1,LOC101070352,LOC100699000,LOC101480665 other downstream 442040 31565245 ~ 31653583 (+)
LOC120544927 NA other downstream 688524 31811729 ~ 31832260 (+)
LOC120545711 NA other downstream 936720 32059925 ~ 32078010 (+)
G179655 cox5b,LOC106567989,LOC106563057 other downstream 955972 32079177 ~ 32099542 (+)

Expression


Co-expression Network