G179655 (cox5b,LOC106567989,LOC106563057)


Basic Information

Item Value
gene id G179655
gene name cox5b,LOC106567989,LOC106563057
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 32079177 ~ 32099542 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU243291
GTCAATATAGAAGACTGAGATTGGCTGACTGTATCCTGTCTCCTCCTCCAGGACCCCTACAGCATGATGAAGCCTAAAGAGTACGCTGGCTCCAAGGCCGATCCTCACCTCGTTCCCTCCATCACTAACAAGAGGATCGTGGGATGTGTCTgtgaAGAAGACAACACGGCCGTGGTCTGGTTCTGGCTCCACCAGGGTGACGCCCAGCGCTGCCCCTCCTGTGGGTCCCACTACAAACTGGTGGCCCACCAACTCCCCCActaacccccccacacacacacctctcttaACATAGACATAGGTCTCTAATAGCATATGTTACTAGATACATATGTCTCTAATAACATGTTACTAGATACATATGTCTCTAATAACACATGTTACTAGATACATATGTCTCTAATAACACATGTTACTAGATACATATGTCTCTAATAACATATGTCTCTAATAACACATGTTACTAGATACATATGTCTCTAATAACACATTACATATGTCTCTAATAACATGTTACTAGATACATATGTCTCTAATAACATATGTCTCTAATAACATGTTACTAGATACATATGTCTCTAATAACATATGTCTCTAATAACACATTACATATGTCTCTAATAACATGTTACTAGATACATATGTCTCTAATAACATATGTCAATAATAACATGTTACTAGATACATATGTCTCTAATAACATATGTCTCTAATAACATGTTACTGGAGACATATGTCTCTAATAACACATGTTACTAGATACATATGTCTCTAATAACACGTTACTAGATACATATGTCTCTAATAACACATGTTACTAGATACATATGTCTCTAATAACACATGTTACTAGATACAAATGTCAATATAGACATATGTTACTAGAGACATATGTCTCTAATAACATATGTCTCTAACAACATGTTACTAGATACATGTCTCTAATAACATATGTTACTAGAGACATATGTTACTAGAGACCTATGTCATTAATAACATATGTTATTAGAGACATATGTTACTAGAGACCTATGTCTCTAATAACATGTTACTAGAGACATACGTTGTTATAATATAGACATGTATCATGCAGCTGAAATATTCCTCTTAGCTTCAGAACGGGGAGAAGAAAGGTCAGATAGTCTCCAGGAAGTGTATTTATCCTGGAACATTTTATTTCCTGGAGTTGTGAGCCGTCGTCTGATTGGTCTCTGACTCGTTCTgtctagagatgttccgataccattTCTTTCCTTCCCAATATGGCCGATACCGAGCACCGATCAGATACCCATGTGTGTCATATTATCTACTatctactatctctgtatggatgtgatgcGACCGCTATCATTGTTGTTTAACTCTTTGGGGAAAGCCATTGTCATAACTGGGAAAAGAACGTGACGTGGTATCGgttcggtgcataaactccagcaCTCGCTGATCCGGTACCAGAGTTTTAGGCAGCATCGGAGGCTTTTAGATaccggtatcggaacatctcgtTCTGTCTCGTACTTGATAGACCTGCTGACCTCATCAGTCTTTGCTTTACGTGTCGGCGCAGGGATCACATGTGGTTTGGGACACAACTGTTTTCTTCAAACATTTCCATTCATCGTTCAGTTTACATTCACACACTCGTGTACTGTATTGTAATGTTACACTCTGGTCCACCTCACTCCTTTGACTCAACCAATAAAATCCTCATACTTTATATTTCTC
>TU243292
GTCATCAGCGTGCGACTAACTTCTGGTGACAGGAAAGAAGAAGGAAAGATGGCTGCAAGGTTACTGCTCCGCTCGGCTGTTCGAGCCGCGACAACCTGCCGGGCTGCCCCGGTCCCGGCTCTGACCCGCGGCATGGCGGCTGGAGGGATCCCCACTGACGAGGAGCAGGCCACCGGCCTGGAGAAAATCATCATGAAGGCCGCCAAGGAGGCGGTGCTACGCATTCATCTTCTTGAGTCTGTGATCACGTTTACGTAGGGCTGCGCAATTAGAtcttttcctcatattgtgcagccctacgtTTACGTGCACGCTACTGTTCCCAGTATGATACAGGCGATGTCAACGGCTTACAGGATCCTCAGAATGGCATCATTTATATCATATCCCCTCTAAGCATATGCTTTACGTTTGCTACATATGTATACCAGGGTTCGTACGTTttgaaaagttatggaatttgaaaaatgcaaattatgaaaatcaagttttaggcaaaataccactttgttgctgaaaggacaacgaaaacaggtatggatgcactctcgacacCTGCGCAGATtacggctgaattgttttatttttctgttactttaacagttgtgtaactgctataaatcatcgtatgctttgtaagtgggcttaaattaatcattagag
>TU243294
CTGGCGAAAGGACAGCAAAGGAGGAAACATGGCTGCAAGGTTACTGCTCCGCTCAGCTTTCCGAGCCGCGTCAACCTGCCGGGCGGCCCCGGTGCCCGCCCTGACCCGCGGCATGGCGGCTGGAGGGATCCCCACTGACGAGGAGCAGGCCACCGGCCTGGAGAAAATCATCATGAAGGCCGCCAAGGAGGGCGCGGACCCCTACAGCATGATGAAGCCTAAAGAGTACGCTGGCTCCAAGGCCGATCCTCACCTCGTTCCCTCCATCACTAACAAGAGGATCGTGGGATGTGTCTgtgaAGAAGACAACACGGCCGTGGTCTGGTTCTGGCTCCACCAGGGTGACGCCCAGCGCTGCCCCTCCTGTGGGTCCCACTACAAACTGGTGGCCCACCAACTCCCCCActaacccccccacacacacacctctcttaACATAGACATAGGTCTCTAATAGCATATGTTACTAGATACATATGTCTCTAATAACATGTTACTAGATACATATGTCTCTAATAACACATGTTACTAGATACATATGTCTCTAATAACACATGTTACTAGATACATATGTCTCTAATAACATATGTCTCTAATAACACATGTTACTAGATACATATGTCTCTAATAACACATTACATATGTCTCTAATAACATGTTACTAGATACATATGTCTCTAATAACATATGTCTCTAATAACATGTTACTAGATACATATGTCTCTAATAACATATGTCTCTAATAACACATTACATATGTCTCTAATAACATGTTACTAGATACATATGTCTCTAATAACATATGTCAATAATAACATGTTACTAGATACATATGTCTCTAATAACATATGTCTCTAATAACATGTTACTGGAGACATATGTCTCTAATAACACATGTTACTAGATACATATGTCTCTAATAACACGTTACTAGATACATATGTCTCTAATAACACATGTTACTAGATACATATGTCTCTAATAACACATGTTACTAGATACAAATGTCAATATAGACATATGTTACTAGAGACATATGTCTCTAATAACATATGTCTCTAACAACATGTTACTAGATACATGTCTCTAATAACATATGTTACTAGAGACATATGTTACTAGAGACCTATGTCTCTAATAACATGTTACTAGAGACATACGTTGTTATAATATAGACATGTATCATGCAGCTGAAATATTCCTCTTAGCTTCAGAACGGGGAGAAGAAAGGTCAGATAGTCTCCAGGAAGTGTATTTATCCTGGAACATTTTATTTCCTGGAGTTGTGAGCCGTCGTCTGATTGGTCTCTGACTCGTTCTgtctagagatgttccgataccattTCTTTCCTTCCCAATATGGCCGATACCGAGCACCGATCAGATACCCATGTGTGTCATATTATCTACTatctactatctctgtatggatgtgatgcGACCGCTATCATTGTTGTTTAACTCTTTGGGGAAAGCCATTGTCATAACTGGGAAAAGAACGTGACGTGGTATCGgttcggtgcataaactccagcaCTCGCTGATCCGGTACCAGAGTTTTAGGCAGCATCGGAGGCTTTTAGATaccggtatcggaacatctcgtTCTGTCTCGTACTTGATAGACCTGCTGACCTCATCAGTCTTTGCTTTACGTGTCGGCGCAGGGATCACATGTGGTTTGGGACACAACTGTTTTCTTCAAACATTTCCATTCATCGTTCAGTTTACATTCACACACTCGTGTACTGTATTGTAATGTTACACTCTGGTCCACCTCACTCCTTTGACTCAACCAATAAAATCCTCATACTTTATATTTCTC
>TU243298
GTCATCAGCGTGCGACTAACTTCTGGTGACAGGAAAGAAGAAGGAAAGATGGCTGCAAGGTTACTGCTCCGCTCGGCTGTTCGAGCCGCGACAACCTGCCGGGCTGCCCCGGTCCCGGCTCTGACCCGCGGCATGGCGGCTGGAGGGATCCCCACTGACGAGGAGCAGGCCACCGGCCTGAAGCCTAAAGAGTACGCTGGCTCCAAGGCCGATCCTCACCTCGTTCCCTCCATCACTAACAAGAGGATCGTGGGATGTGTCTgtgaAGAAGACAACACGGCCGTGGTCTGGTTCTGGCTCCACCAGGGTGACGCCCAGCGCTGCCCCTCCTGTGGGTCCCACTACAAACTGGTGGCCCACCAACTCCCCCActaacccccccacacacacacctctcttaACATAGACATAGGTCTCTAATAGCATATGTTACTAGATACATATGTCTCTAATAACATGTTACTAGATACATATGTCTCTAATAACATGTTACTAGATACATATGTCTCTAATAACATATGTCAATAATAACATGTTACTAGATACATATGTCTCTAATAACATATGTCTCTAATAACATGTTACTGGAGACATATGTCTCTAATAACACATGTTACTAGATACATATGTCTCTAATAACACGTTACTAGATACATATGTCTCTAATAACACATGTTACTAGATACATATGTCTCTAATAACACATGTTACTAGATACAAATGTCAATATAGACATATGTTACTAGAGACATATGTCTCTAATAACATATGTCTCTAACAACATGTTACTAGATACATGTCTCTAATAACATATGTTACTAGAGACATATGTTACTAGAGACCTATGTCATTAATAACATATGTTATTAGAGACATATGTTACTAGAGACCTATGTCTCTAATAACATGTTACTAGAGACATACGTTGTTATAATATAGACATGTATCATGCAGCTGAAATATTCCTCTTAGCTTCAGAACGGGGAGAAGAAAGGTCAGATAGTCTCCAGGAAGTGTATTTATCCTGGAACATTTTATTTCCTGGAGTTGTGAGCCGTCGTCTGATTGGTCTCTGACTCGTTCTgtctagagatgttccgataccattTCTTTCCTTCCCAATATGGCCGATACCGAGCACCGATCAGATACCCATGTGTGTCATATTATCTACTatctactatctctgtatggatgtgatgcGACCGCTATCATTGTTGTTTAACTCTTTGGGGAAAGCCATTGTCATAACTGGGAAAAGAACGTGACGTGGTATCGgttcggtgcataaactccagcaCTCGCTGATCCGGTACCAGAGTTTTAGGCAGCATCGGAGGCTTTTAGATaccggtatcggaacatctcgtTCTGTCTCGTACTTGATAGACCTGCTGACCTCATCAGTCTTTGCTTTACGTGTCGGCGCAGGGATCACATGTGGTTTGGGACACAACTGTTTTCTTCAAACATTTCCATTCATCGTTCAGTTTACATTCACACACTCGTGTACTGTATTGTAATGTTACACTCTGGTCCACCTCACTCCTTTGACTCAACCAATAAAATCCTCATACTTTATATTTCTC

Function

symbol description
cox5b Predicted to enable cytochrome-c oxidase activity. Predicted to be involved in mitochondrial electron transport, cytochrome c to oxygen. Located in mitochondrion.

NR:

description
PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243291 False 1728 lncRNA 0.39 2 32096300 32099542
TU243292 False 663 TUCP 0.47 2 32089428 32092131
TU243294 True 1825 TUCP 0.42 5 32079177 32099542
TU243298 False 1589 TUCP 0.43 5 32089428 32099542

Neighbor

gene id symbol gene type direction distance location
LOC120545077 LOC106675582,LOC101480093,LOC106676976 coding upstream 108850 31969324 ~ 31970327 (+)
LOC120545689 LOC102797342 coding upstream 146922 31928596 ~ 31932255 (+)
LOC120545688 LOC106675582 coding upstream 156727 31919840 ~ 31922450 (+)
LOC120545686 NA coding upstream 180358 31896660 ~ 31898819 (+)
LOC120545684 NA coding upstream 184823 31892428 ~ 31894354 (+)
npy8ar LOC104936321,LOC100707308,LOC102193818,LOC105917043,LOC106524407 coding downstream 114190 32213732 ~ 32226606 (+)
march5l LOC108230907,LOC103372995,LOC103389347 coding downstream 176799 32276341 ~ 32291928 (+)
kctd9b kctd9,LOC101469399,LOC101073738 coding downstream 196306 32295848 ~ 32305583 (+)
fgfr1b LOC103372997,LOC106524404,LOC108231094,LOC103152302,LOC106947031,LOC102225656 coding downstream 233331 32332873 ~ 32378068 (+)
LOC120545081 NA coding downstream 644994 32744536 ~ 32745879 (+)
G179652 NA non-coding upstream 1006 32072817 ~ 32078171 (+)
G179653 NA non-coding upstream 5457 32073168 ~ 32073720 (+)
G179644 NA non-coding upstream 62486 32016382 ~ 32016691 (+)
G179637 NA non-coding upstream 70042 32008437 ~ 32009135 (+)
LOC120545691 NA non-coding upstream 134516 31943592 ~ 31944661 (+)
G179699 NA non-coding downstream 118657 32218199 ~ 32218689 (+)
G179687 NA non-coding downstream 150531 32250073 ~ 32254791 (+)
G179707 NA non-coding downstream 172881 32272423 ~ 32332287 (+)
G179709 NA non-coding downstream 175926 32275468 ~ 32275763 (+)
G179713 NA non-coding downstream 184583 32284125 ~ 32284942 (+)
LOC120545711 NA other upstream 1167 32059925 ~ 32078010 (+)
LOC120544927 NA other upstream 246917 31811729 ~ 31832260 (+)
LOC120545154 hapln1,LOC101070352,LOC100699000,LOC101480665 other upstream 425594 31565245 ~ 31653583 (+)
G179407 NA other upstream 599083 31387747 ~ 31480094 (+)
LOC120545414 LOC106676976 other upstream 1747563 30324112 ~ 30331614 (+)
LOC120545732 lage3,LOC103372999 other downstream 342468 32442010 ~ 32448815 (+)
LOC120545086 LOC100699756 other downstream 865419 32964961 ~ 32984052 (+)
mrps18c NA other downstream 1004349 33103891 ~ 33109471 (+)
G179903 NA other downstream 1015149 33114691 ~ 33187628 (+)
abraxas1 fam175a other downstream 1090479 33190021 ~ 33197957 (+)

Expression


Co-expression Network