LOC120545689 (LOC102797342)


Basic Information

Item Value
gene id LOC120545689
gene name LOC102797342
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 31928596 ~ 31932255 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780243.1
GTGTCGTTTCCCAGCACAGAAGGAAAAGGACAAAGTTATGTAACGCTGCGAGACGTAAACGCATGTGATCCTTTGACATGTAACAGCCTGCTAAGGGAAGTCCATATACGGTCAGACAGGTGTGTCTGCAGGTTCACAACTGTGCTGGGAGGGTTTGAtctgcagagacagagacacacagagacacacataacaaacacagagagacacacagagacacaacgtctctcagagacacacataacagacacacagagactttATCTTTCACCCAGCGAGCAGCAGCAGAAGGATGGATGACAGCGGGGAGTGTAACCGGGCAGTGCTGGTGTCTGTGGCCCAGTTTGTCCCTGGTgtgagtctggggaggaggccTGGAGCCGACAAGGACACCAAGACTCTCCACCGCACCCTCAGCAAGCTGGGCTTCAAGGTGGACATCCACAGTGACCTGAGCGGGGACGAGATCTACCAGCTGTTTCTGAAAGagagCCGGCGGCCTGTGAAGGACTGTTTTCTGGCCGTCTTGTCGTCTCACGGGGACGAGGGATGCGTGTTCGGGGCTGATGGGAAACCCGTCCAACTGTGTCGTCTCTTTTCATATTTTGACAACGAAAACATGGAGAAGAAGGCCAAAGTGTTCCTCGTACAGgcgtgTCGGGGAGGTGGTCTGGATGACGGTGTGGAGGTGGATTCAGCTGGTGACAGCAGAGACTTCTCACAGCATCTCTCTATTCCTGTAGACACAGCTGTGATGTACGCCACGCCgccagGTTACGGGGCGTTCATGCACCCACTCGGATCCGTCTTCCTCCAGACGTTCTGCACTTTATTAAAGGAGGACGGCAACCGTAACCTGGAGCTGACGCGCCTGATGACCCGCCTCTCCCACCGGGTGGCCTACAGCTTCCAGGCCAAAGGGAAGTTCGCTGGGAAGAAAGAGATGCCGTGCCTCGTCACACGCCTGACCAGAGAAGTGTTCCCGTTCGCTGAGCCGAGGAAAGACAGCGGCGCCGCGGAGCTCTCGGCCACCTCGCTGCTCGACACTCAACACGTGTCCACACGCACTCCTTCCATCAGTTAGCAGCAGCTGCAGAGTGGACGTGACAGTTATGATCAGCAGGTATGGAGACTGCTGAGACAGACGAGATAAACCTGTTGGGAATGCCCTCACGCTGTCTGACATCCTGCAGAAAATCAATGTCATCAGGGAAATATTCTGCTGAGATATTTTGCACATACTTTACATACTCTGGAGGAGATTAGATATTTAAATGTAAAGCTGTAACTCAAAGAAACTCTAAACCTTCATCAGGTAACATGATCAGAGTTTTAAGGTGAAGGATTTTGCCAGATGAAGGTCTAGTACCAAAACGTTGCCTACTATTACATTCATTTCCTGCAAGTTTGACAGAGTGCAGGAGTTTATTGCAGCTTATGTTTAAATATGGGAAATGTAAAGCTGTATTTAATGCACCTGTGTGCTGATGTTTGAGTGTCTAAACTTGCAAAGAAACTCTCGCATACTGTCTAACTACAAACTACACACTTCTGTCTAAAAGTGAAACATTGTGTTTGAAAGTCCAAAGTTAGGGGAATGGAGCTGAGCAATGACCACACAGAGTACCATGTTACTGTTTCTGTATGTCATTATGTTATGCTTTTAGCCCCCAGTTACTGTGTTTTTACTGCAGCTTATCAGCATCCTTCCTCATCTGCTGCTTGGACTATTTCACCTGTAGTTATAAAATAAGGACATTGACTGTAATGTATTCATATGATCTTTTATTGTACGACATGCTATTTATCTACCATTTAATATTGAACATTTTGGTGCTCCATAGTTCATCTAAGTGATGACGAGACGATACCTCATGAAGTCATGAAGCTTTCCAGCAAAGTGGTTCATTTCTCACGATACCACCTGTTGGCCAAAGAGTGTAAAATAGGCACAGATGATCGGATATATTTCACGTAATCCGTTCATATCAACacagtgtgtcttgtgtgtggtATACTGTCACTAATGATTGTATAACATAACTGTATAATAAATAGATTGCCTTGAGAGGAATGTGGCTATCAAA

Function

NR:

description
PREDICTED: caspase-3-like, partial

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780243.1 True 2087 mRNA 0.47 4 31928596 31932255

Neighbor

gene id symbol gene type direction distance location
LOC120545688 LOC106675582 coding upstream 6146 31919840 ~ 31922450 (+)
LOC120545686 NA coding upstream 29777 31896660 ~ 31898819 (+)
LOC120545684 NA coding upstream 34242 31892428 ~ 31894354 (+)
LOC120545680 LOC102797342 coding upstream 55545 31869947 ~ 31873051 (+)
LOC120545679 NA coding upstream 61084 31865403 ~ 31867512 (+)
LOC120545077 LOC106675582,LOC101480093,LOC106676976 coding downstream 37069 31969324 ~ 31970327 (+)
LOC120545730 cox5b,LOC106567989,LOC106563057 coding downstream 146906 32079161 ~ 32085915 (+)
LOC120545731 cox5b,LOC106567989,LOC106563057 coding downstream 157170 32089425 ~ 32099534 (+)
npy8ar LOC104936321,LOC100707308,LOC102193818,LOC105917043,LOC106524407 coding downstream 281477 32213732 ~ 32226606 (+)
march5l LOC108230907,LOC103372995,LOC103389347 coding downstream 344086 32276341 ~ 32291928 (+)
G179571 NA non-coding upstream 73020 31854777 ~ 31855576 (+)
G179567 NA non-coding upstream 95742 31832551 ~ 31832854 (+)
G179483 NA non-coding upstream 175262 31752929 ~ 31753334 (+)
G179480 NA non-coding upstream 181133 31746385 ~ 31747463 (+)
G179475 NA non-coding upstream 208281 31717925 ~ 31720315 (+)
LOC120545690 NA non-coding downstream 5509 31937764 ~ 31941941 (+)
LOC120545691 NA non-coding downstream 11337 31943592 ~ 31944661 (+)
G179637 NA non-coding downstream 76182 32008437 ~ 32009135 (+)
G179644 NA non-coding downstream 84127 32016382 ~ 32016691 (+)
G179652 NA non-coding downstream 140562 32072817 ~ 32078171 (+)
LOC120544927 NA other upstream 96336 31811729 ~ 31832260 (+)
LOC120545154 hapln1,LOC101070352,LOC100699000,LOC101480665 other upstream 275013 31565245 ~ 31653583 (+)
G179407 NA other upstream 448502 31387747 ~ 31480094 (+)
LOC120545414 LOC106676976 other upstream 1596982 30324112 ~ 30331614 (+)
zmiz2 zmiz2 other upstream 1617702 30259366 ~ 30310894 (+)
LOC120545711 NA other downstream 127670 32059925 ~ 32078010 (+)
G179655 cox5b,LOC106567989,LOC106563057 other downstream 146922 32079177 ~ 32099542 (+)
LOC120545732 lage3,LOC103372999 other downstream 509755 32442010 ~ 32448815 (+)
LOC120545086 LOC100699756 other downstream 1032706 32964961 ~ 32984052 (+)
mrps18c NA other downstream 1171636 33103891 ~ 33109471 (+)

Expression


Co-expression Network