LOC120545154 (hapln1,LOC101070352,LOC100699000,LOC101480665)


Basic Information

Item Value
gene id LOC120545154
gene name hapln1,LOC101070352,LOC100699000,LOC101480665
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 31565245 ~ 31653583 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU242992
gagacacacacacacacacacacacacaaacacacacacacacacacacacaagcacacacacacacgcacacacaggtttgtgacTCTATCTTTGTGGGTCATTTggcgtcattgacataatgcattccctagccccttaccctaaccttaaccatcacaactaaatgtctaacTTTAatccttaccctaaccttaaccatcacaactaaatgtctaaccttaacccttagcctcaccttaaccatcacaactaaatttCTAACTTTAATCCTTACccttaccttaaccatcacaactaaatgcctaaccttaacccttaccctcaccttaaccatcacaactaaatgtctaactttaatccttaccctaaccttaaccataacctaattctatccctaatcctaaaaccaagtcttaaccctcaaacagccctttatacttgtggggtccagcattttggccccacaaagctgtcgggaccccacaagtatagtggactcccggtttttggaccccacaaatatagttaaacaagcacacacacacacacacacacacaaaaaaacacactcaaACTGTGATGCTTTATTTCATGGAAACCTTAAGACATTACTGTCGACATGTTGCTATGTAATCTGCGACCTGAAACTCTCTGAGGGATAGTTTACACATATTTAAGGTTCATATTATTTAATCAATGCCTTTGaaatggggggaggggggtggtgggtggggttgAGGGTTGGAAGATATTACAGGCATGTCATAATATAAGAAGAAAACGACACGTCTGAACTGAGAACAGTTTCACAGCAAAACGGACGGATACTTTGGGCActtatcttgttttgttcaagACCCGGAAGAACAGCCACGAAAGAAACACAGCGGGAAGAAAAAAGCTCAGATCCTGTGATGCTTGTCGTCAGGCAGGACGACAAGCCTCGCACAACTAAACCGATCTTTGCTGTCCATACTTAAAACAAGGTGCTACTACCGGTACTTTGTACGCCATCATACCGTTCAGTATTTTACGTTTTTATACAAATGTGTTGGACCAAACATCATCACCAAAAAGAAataaggaaaaggaaagaaatccaacattgtttatgttttttctaAGTATGTAGAATGTTATTATCtagaaatgtacttctgtttatgagtattttttgatatactgtagaaatatttacattataatttttttgtcttattgGCCAAACTATCCAAGTCTCTTCGGTTTACATAAAGCTTTAACCagagactgtaaaaataatggacgttTGTGGACTGCCGCTTTGAAGCCTCGAGTTTGGCGTTGCCACTGCCCGATTTGAGtggagtgcagatgtgagttgcgcatgctcagatttaaacggtttacagCATAACGCCAAGGGATCCGGCAAACGTTTTaactatctatgattgtttcatTGCTAACGTTCGCTCAAAacaccattcaagtgacagcctttgtcatgtctgattgctaacttgtagctagcagtgaACAAACTTCgttatgtaggtccatttttattgtattgacattacagaagtatctcgttagcaggttcttgtagactacttcagacattacagaagtctctcgttagcaggttcttgtagactacttcagacattacagaagtctctcgttagcaggttcttgtagactacttcagacattacagaagtctctcgttagcaggttcttgtaggctacttcagacattacagaagtctctggttagcaggttcttgtagactacttcagaaaTTAAAGAAGTCTCTcattagcaggttcttgtcggcTACTTCAGCATCTAATCTAGAACTGACATCAGGGATCATGCCGTGAAAATGTGATGCCTTAcgataaataataaatgaccACTATGTAATGTTCCTATCTCGTTATTCTGTGGCTAACAGCAAAACAGATCTGCGTGaagtcgcaaagtgacgcacgcgcaactcacatctgcactagACTCACATTGGGAAGTGACACCGTAcgtaaacatttttaaaaagaggGTGGATGACACGGctagagccagtgttgttttTGGTTGCTATGGCGCGgcgctaagctaaatgctaaagagggaaagttgacGATTATCAACCCTTccgaagcgagtcatccagcggAGATTTACCGGCGGGGAAACGCAGACCTTTGGGTACTGGCGTCATtaatctgcatgtacggcataACAGGAAATCGGCAAACTTTCCctcaagttaccagctaacgctcgAGCAAACTAAAcagcttggttggcagaacgctcaacaagacatttttaggtgaCCAAAATGTCCAAATGAACTTTGCTGAATTGAAAACAcgcagtgagagggtcaaagttgaGGCCGAAAACAAGTTGAAGGTTGCTTTAACGTCcccagtgttagcatggttagcatcgctaagcctctgtcctgacggacaggtcctaaagcaacccctgctttatcgtctgttttaaaataaacgGGACCATcgtttactaaatgaacatcctgctgtattgaagaagacttgaaactagcgattgagaccataaacttgTGTTTACCGAGGTAACAACTCAAATGAGAAGTAGGCTCAATATCAttagcattggcttcacttttcagacacGGAAGtttcgtccattatttttacagtttatgAACGTAACATAACAGTGGAAAGAAAATGCAAAACTCCACgacacaaaaaataattaataaatgaatTTTGCACTGAACATGTAGATGAATTTGCTTAAAAGAGAAGAGACGAGGCAAACGGTAGTCGGCCCTGTGCAGCAATAGAAAATGCCTGGCATGAATAGAAACAGCACTGTCCTGCATAGTCACTCTTTGTGGCTGTATCTGTCTGTTCGGCTTCATCTTAGACTTCAGAGCATGACTCAGCTTCTACAAGCACAAAGCAGCAGTCATTGTAGATCTGCGcatattatctatctatctagcgcCTTGATGAACTGATATTTTTGATACAAATACTGTAGTTTCTTATAGTGAACGAGCAAAGGCCAAGGCTAGCCTAGGCTCGTGACCTCAGCCCTCCGTACGTAAAGGCCGTGACGCACCAACatggtctcacggcagttcgtgaaatggtcacgttatttttactCTACTGATTcctgtacacggacacgttcaTCTCGGGGTTTTTTCCGTGGTGCTCAGCacgtaatgggaagcatctatacggaggttgggtttagggtgaaagtcctgtgttgtaaCTCTAAAGTTAATaatccttttattttatttccaccAAATTGTACATTTCAAATATGTAAACGTATTGCTACAACAAAGTTTTTAACTCAAATGTTAAGCTTTCGCAccacccgaccaacctccctgcgcagattttcatactactcgctaccgtagtcgtgctgtgatcgcGAAATATGCTTCCCCATTGACATACATTAGATTAAAATTCGTGCTCAACGCCtcgaaaaaaaacgacattaacgtgtccgtgtacaccacatgtgtcaaactcgaggcccgcgggccaaatacGGCCCGTTGTAgctttagatccggcccgtatatcaatttgggttcacaatagattttggctcgcctagttgtgcgccaaaccaaaaacacaggaaggtgtttttttaaactgcaattacgtgacattcaaagcagaatttggcagatttgcagactctgagactcagagattcccccagaagaagcagagagagagttttcatattcaggctaagaaacaggttgttgctaaaaaaaaaaaaatcattgttttgcttaatttgctaaattctacgatggctaaggaactcttttgatgacttttgtaagGCTTCATATCGACAAAAATGCggcaaaaagcaaaaaaattacaaaaacgggagaaatgtctgagaaagccacaaaaaagtttgaacaaaaacaaataaactctACGTGTCTGGCctttggtgtgattctcttttttccagtgtggcccttagtgaaaatgagtttgacacccctggtgtacacgaatcaatagattaaataacgtgcccacttcacaaactgccgtgagacttgGTTGGACACACCAAGCAGACGGCAAAGAACTAGTGTCAACAAAAGCCAGACTCTGGCGTCGCCTCACTTTGCCGGCATCTCGGCCAAAAAGCTGCACTGACTACAGCGGACAGCCAACTAGCACGTGCGCCTGCATGAAAGGAAACAGCTCTCCCTGCCAGCAGGTGGCGGTAATCTATTCGTCAATCAAAAAGGGAAACCGGATATACAAACGGCTGCTATAATACGAAAAAACTAAACAGCGTTCTAGCAGCAAAGAGCCTACGGCCCCCTCGGCTTCACTCTCCACCGGGAGACAGCGGACACCGGGAGATGGCTAACCAGACTGTCCATCTCCCGGGGCTGTCATCCGTTCGCTCCAgctggtggaagaagtattcagatcctttacttcagtaaaagtactaataccacactgtaaaaatactctgttacaaataaaagtcctgcattgaaaatgctacttaaataaaagtatgtaagtgtagtcaggaaaatgtagttaaagcattaaaagtaaagaaaaatcctcccattttagaaacagctgtgtgtttaatggtctcatcatctcagctggacttgtagccgttatattgtcggctagtttactttagaatcagacatcagattttataaactacatgtgttctgtgtgcaggaatcttaatgtgtaaagtaactagtaactaaagtaactagtaactaaagctggaacagatgaatgtagcggagtaactaaagtaactagtaactaaagctgtaacagatgaatgtagtggagtaaaaagtacaatatttctctctgaaatgtagcggagtagaagtagaaagtggcatgaaaagaaaagactcaagtaaagtacaagtacttcaacatttggactgaagtacagtactggagtacatgtacttagttacattctacCGCTGGTTCTCTCGGCAAAGAAGTGGAGAGCGGAGCGGAGGGACCGACCGGGCCGCCGCGGGAAACACTTTATAACCGAATCACGGAGTAACGTAcggagtagggctgcacaattaatcgcaatatacaaaaatcacactttaatcatttacattttaatatttctcaatgaaaatgagaataatcatacaaaaatgatcattccctccaatatcgttaatcatatcgcaatcacaatatcagtcaaaataatacgcaattagatattttcccaGCCCGTTCTCACTCCTAACCCgcaaatacggacgcttggtcagtgtcgCTTAGCGccagataccgacgcaaaaatcacccttcagcGTCTGCATGGAGTGCACCGAGGAAGAGCTgcagctcgaccgcggcgctgtaagatgacgtagtgtTAAGAGAGACGACGGTAGTGAATAGCATGAAAGACCGAAATGTGGcttaaggaggcaggttggatGGGTCaagggggtggatgggtcaaacacaggactctcTCCCAGGAGACCGCggtttgtgtcccgttcttgtacCGCGTGTCACCGAAAGGTAaattttataaccccacccaccatcttttcctaaaccttgtgccgcatgtcagttcaACGTGCGTCCTGACCCAGAGGGCCAAAAGTGGCGCCAAGCGTCCCGACCAAGCTCGTTTAGATATGAGtctaaaaggagacttttagcgtcaataacaattGCCAAAAGCACATAATCAAGCGTCCGTAtttgacgcgatgggagtgagaatgtgttgattttcctcatatcgtgcagccctagtacgGAGTGCTGAGCCCGGCCCTGAGTGAGCGTGGTCCCCTTGGCAGCCTCTGGCTCCCTGATTGCTATCTAAGCTCTGCAGAGACTATGAACCGGCCGACCCAGCGGGCCGGCAGCCAACCTGCACCAGCCTGCTGAATGAGACAGAAATACAATACATCCAAAATACCAATAATTCCTGCAGGAAAGGCACTAAGAGCTTCTTCCATGTAAGGGCATCGGAGAGTAAACGGTACACATTGATCAAGAGTAAGCTCACTGTAAGCAGTCCCAGCTGGCCCGTATGCTGGTTTAGGTCATCTACTTGGGCTTGGTGCAATGTTTGCTTTACTTGGCTCTGTCCTTGACAAGCCACTGAACAATCAGCGACACTTATCACTCAAGAACTTCTGCACAGACTCATTAAACTGGCTCTCTGTAATGATTAGACACTGTGGGAAATAAAAAGGTGATTTTACAGAACAACAACTGTGAAGTAGAAACACTTACCGAAGAGTCTTCTGTAGGATTGCAAAACTAAAAAATGTGTTCCTTTTAActtgtgtttttgtcagttATTGTAAACAGTTTTCAAACCATGTTAAGtgtctgtttgttgttttaaagggatagtttgacattttggggagTGCAACCAAGTCGCAGCTAAAACCACGAGGTCATCCCTTACGTTCCCAGTCTTAGTGTTCCCTTGATATAAACTAACTTTGTAAGAGATTGCTAAGGGCTATCTTCACAGGTCAGATTGCAAAAATCTAAGAGAAATAAAAGTTTCAAATGCAGTTTGAATGGTAAAAATCTGTTTAGCCGTTGGGGAGATATCAATGTTTAAGTCAAGAAAGCCGTCCCTTTCAAAGGTCTtcttaaacatattaagaggATATTGAGCTGGGGAACGTGTTGTTTTAAcgtttctgtttgtgtacagATTAAAGAAACGAGATCCAACAAAGTCTTAATTAGTAAAGAATCGCTGCAGCGAGCAACCAGctagtttagcttagcttacAAACTGGAAACagtgggaaacagctagcttagctctttTCAACGCTAACAAAATCCCAAAAAGttttaaagctcactaattgaCGTGACtgttgtacagattaaacacaCAAGATATACATGTTAaaaagtgagctttagaggtgctgataggtgtattttttaaactttgggCTAGCTGTTTtttaccttgcacggcagctcAATTCTCGCGATATGAATGATCTTGAAAATCCATCTTCAATTAAATGCGCTTGTGTCTGAACAGCTGCGGACCGAACCAATCAgcattccccctgcttccaatctttaagctaagctaagctccTGCTGGCTCAAGTTCACTTTTAGCACACGGATATGAGAGCGTATTTtactaaaatgtcaaactattccttaaaAGGATTTAAAGGAAGCCCCAAATGTTGTTGCCTTTTCTTTTGTGTATAATCTGACCAACTTTTAGGAGCTGCAGCATTACTAGGAAACCTTAGGGACCCAAAgacaaaatgacaataaaacagtaCA
>XM_039779231.1
GGCACGCACGGGCACGCACGCATAGGAGTGCGTCTGTTCGCTGCCACCCTTGTGTTCCTTTCAGAGGAGCCAGGAGAGGCGGACAGGACATCCACACACCGGCTGTTGGGTCGGACCTTGGCGTGCGTAATTCACTCTCCCCCAGACCGCCGGAGAGCTCCGACTTTTACCGCAACACAGGACGCAACGCGGACCAGtGATCAGACCCCCAGTTTGGTGATTGAAGATGATTCCTGTGCTGATCTGTGCGCTGATCTCTCTGAGTGTAGCTGCCAACGACTTAGACACTCTGTACCCTGAACTGGAGCACTCGAGAACCATCTATGTcacagAAAACGACCCTCGACTCTCAGTGGCAGCTGACCAATCGAAGGTGGTGTCGAGGCGAGGAGGAAACGCTACGTTACCGTGCAAGATCCAAATGGACCAATCCCTGATACCCAGCCGGAAGATGAGGATCAAATGGACCAAGCTGACGTCAGACTACCTGAAGGAGGTGGATGTTTTTGTGTCGATGGATTATCACAAACGGAGTTACGGCACTTTCCATGGACGAGTCCACCTGCGAGGCTCCTCTCCGATGGACGCCTCTCTGGTCATCACAGACATCACCCTGGAGGATTATGGGAGATACAAGTGTGAAGTTATTGACGGGCTGGAAGACGGAACAGTGGTGGTGTCGCTCGACCTGGAAGGTGTCGTCTTCCCCTACTTCCCCCGCCTGGGTCGCTACAACCTCAACTTCTACGACGCTGAGCGGGCATGTCGGGACCAGGACGCCATCGTGGCGTCCTTTGACCAGCTGTACAATGCGTGGCGAGGAAAGCTGGACTGGTGCAACGCCGGCTGGCTGAGTGACGGCTCGGTCCAGTATCCCATCACCACCCCCAGAGAACCCTGCGGGGGCAAGAACACGGTGCCGGGCGTCCGTAACTACGGActgagagacaaagagaagaaCCAATACGACGTGTTCTGCTTCACCTCACACTACAAAGGTCGCTTCTACTACTTGATCCACCCGTCTAAGTTAACCTACGACGAGGCGGTCGGCGCGTGTCAGAAAGACGGCGCTCAGATCGCCAAGGTTGGCCAGATGTACGCCGCTTGGAAGCTGCTTGGCTACGACCGCTGCGACGCCGGATGGTTGGCCGACGGCAGCGTGCGTTATCCCATCTCCCACCCCCGCAGGCGCTGTAGCCCCACGGAGGCTGCCGTGAGGTTCAGCGGCTTCCCCGACAAAAAGCACAAGCTGTACGGAGTGTACTGCTTCAAGGGCCacaactgagacacacacacacacacacacacacacacacacacaagcacacacacacacgcacacacaggtttgtgacTCTATCTTTGTGGGTCATTTggcgtcattgacataatgcattccctagccccttaccctaaccttaaccatcacaactaaatgtctaaccttaacccttaccctaaccttaaccatcacaactaaatttCTAACTTTAatccttaccctaaccttaaccatcacaactaaatgtctaaccttaacccttagcctcaccttaaccatcacaactaaatttCTAACTTTAATCCTTACccttaccttaaccatcacaactaaatgcctaaccttaacccttaccctcaccttaaccat
>XM_039779232.1
aatgaagcCTGAGGTGTGAGCGTGACGCTGCACTGTGCCACAGTCTCCCTCTGAAGTTGTGGACCGTCAGTGTCACCGGGACATGTTTGGATGACAGGGAATCTCTACCGCACAtGATCAGACCCCCAGTTTGGTGATTGAAGATGATTCCTGTGCTGATCTGTGCGCTGATCTCTCTGAGTGTAGCTGCCAACGACTTAGACACTCTGTACCCTGAACTGGAGCACTCGAGAACCATCTATGTcacagAAAACGACCCTCGACTCTCAGTGGCAGCTGACCAATCGAAGGTGGTGTCGAGGCGAGGAGGAAACGCTACGTTACCGTGCAAGATCCAAATGGACCAATCCCTGATACCCAGCCGGAAGATGAGGATCAAATGGACCAAGCTGACGTCAGACTACCTGAAGGAGGTGGATGTTTTTGTGTCGATGGATTATCACAAACGGAGTTACGGCACTTTCCATGGACGAGTCCACCTGCGAGGCTCCTCTCCGATGGACGCCTCTCTGGTCATCACAGACATCACCCTGGAGGATTATGGGAGATACAAGTGTGAAGTTATTGACGGGCTGGAAGACGGAACAGTGGTGGTGTCGCTCGACCTGGAAGGTGTCGTCTTCCCCTACTTCCCCCGCCTGGGTCGCTACAACCTCAACTTCTACGACGCTGAGCGGGCATGTCGGGACCAGGACGCCATCGTGGCGTCCTTTGACCAGCTGTACAATGCGTGGCGAGGAAAGCTGGACTGGTGCAACGCCGGCTGGCTGAGTGACGGCTCGGTCCAGTATCCCATCACCACCCCCAGAGAACCCTGCGGGGGCAAGAACACGGTGCCGGGCGTCCGTAACTACGGActgagagacaaagagaagaaCCAATACGACGTGTTCTGCTTCACCTCACACTACAAAGGTCGCTTCTACTACTTGATCCACCCGTCTAAGTTAACCTACGACGAGGCGGTCGGCGCGTGTCAGAAAGACGGCGCTCAGATCGCCAAGGTTGGCCAGATGTACGCCGCTTGGAAGCTGCTTGGCTACGACCGCTGCGACGCCGGATGGTTGGCCGACGGCAGCGTGCGTTATCCCATCTCCCACCCCCGCAGGCGCTGTAGCCCCACGGAGGCTGCCGTGAGGTTCAGCGGCTTCCCCGACAAAAAGCACAAGCTGTACGGAGTGTACTGCTTCAAGGGCCacaactgagacacacacacacacacacacacacacacacacacaagcacacacacacacgcacacacaggtttgtgacTCTATCTTTGTGGGTCATTTggcgtcattgacataatgcattccctagccccttaccctaaccttaaccatcacaactaaatgtctaaccttaacccttaccctaaccttaaccatcacaactaaatttCTAACTTTAatccttaccctaaccttaaccatcacaactaaatgtctaaccttaacccttagcctcaccttaaccatcacaactaaatttCTAACTTTAATCCTTACccttaccttaaccatcacaactaaatgcctaaccttaacccttaccctcaccttaaccat

Function

symbol description
hapln1 Predicted to enable hyaluronic acid binding activity. Predicted to be an extracellular matrix structural constituent conferring compression resistance. Predicted to be involved in central nervous system development and skeletal system development. Colocalizes with collagen-containing extracellular matrix.

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0007155 cell adhesion biological_process
GO:0005540 hyaluronic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242992 True 7407 lncRNA 0.42 4 31565245 31653583
XM_039779231.1 False 1654 mRNA 0.54 6 31601825 31645660
XM_039779232.1 False 1571 mRNA 0.53 6 31626242 31645660

Neighbor

gene id symbol gene type direction distance location
LOC120545075 LOC103356563,LOC102778235,LOC100706525,LOC101479232,LOC102204790,LOC107394700 coding upstream 106639 31428167 ~ 31458606 (+)
mctp1b LOC103356564,LOC102203739,LOC101478578,LOC102777952 coding upstream 162278 31303145 ~ 31402967 (+)
sept5b LOC103356565,LOC105913293 coding upstream 325207 31202551 ~ 31240038 (+)
acads acads coding upstream 413078 31126459 ~ 31152167 (+)
crybb1 crybb1,LOC101477459 coding upstream 442040 31115852 ~ 31123205 (+)
LOC120546097 NA coding downstream 144648 31798231 ~ 31800033 (+)
LOC120544976 NA coding downstream 188542 31842125 ~ 31844197 (+)
LOC120545076 NA coding downstream 202397 31855980 ~ 31858839 (+)
LOC120545679 NA coding downstream 211820 31865403 ~ 31867512 (+)
LOC120545680 LOC102797342 coding downstream 216364 31869947 ~ 31873051 (+)
G179441 NA non-coding upstream 42867 31521881 ~ 31522378 (+)
G179445 NA non-coding upstream 56240 31486666 ~ 31509005 (+)
LOC120545160 NA non-coding upstream 69825 31464000 ~ 31495420 (+)
G179440 NA non-coding upstream 85972 31438522 ~ 31479273 (+)
G179410 NA non-coding upstream 103049 31461418 ~ 31462196 (+)
G179464 NA non-coding downstream 3333 31656916 ~ 31659171 (+)
G179475 NA non-coding downstream 64342 31717925 ~ 31720315 (+)
G179480 NA non-coding downstream 92802 31746385 ~ 31747463 (+)
G179483 NA non-coding downstream 99346 31752929 ~ 31753334 (+)
G179567 NA non-coding downstream 178968 31832551 ~ 31832854 (+)
G179407 NA other upstream 85151 31387747 ~ 31480094 (+)
LOC120545414 LOC106676976 other upstream 1233631 30324112 ~ 30331614 (+)
zmiz2 zmiz2 other upstream 1254351 30259366 ~ 30310894 (+)
G178881 NA other upstream 1543028 30021319 ~ 30022217 (+)
LOC120545429 LOC104948058 other upstream 1769420 29793804 ~ 29795825 (+)
LOC120544927 NA other downstream 158146 31811729 ~ 31832260 (+)
LOC120545711 NA other downstream 406342 32059925 ~ 32078010 (+)
G179655 cox5b,LOC106567989,LOC106563057 other downstream 425594 32079177 ~ 32099542 (+)
LOC120545732 lage3,LOC103372999 other downstream 788427 32442010 ~ 32448815 (+)
LOC120545086 LOC100699756 other downstream 1311378 32964961 ~ 32984052 (+)

Expression


Co-expression Network