RNA id: XR_005636600.1


Basic Information

Item Value
RNA id XR_005636600.1
length 701
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC120544906
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 30576309 ~ 30577206 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAATATGTAATGTTCGATATGAATGAATTGTACTAAATCAAATACTGTTACTCGTTAACATGATGGTTAGTGTCCATCATGCTTTTGGATTCTGCATCAGACaacttttaaaaatagctaatgttagctagcgttagctaacattagctagcgttagctagcagtaacAGTCTAAGAATATGGTACAGATGAAGTTGGAAATGTTTTGGCAAGGAAATTATTGGATATGACTGAATTTCCATTTGTAGTTGCATTATAGCTTTTGGATTTTGCTGAGGACAACTTTTTGAATTCGGtcatgttagctaatgctagctaacgttagctagcgctagtcTTAGCCTAAAAATCCATTTTGAACTGATGTTTGGCAAGGATGTGACAGTATTTGTTGCTGTAATTGTGTTGTAATGTGTTTGTAGAGAGGAAAATGCCAGGCGgagagggaagaaaagagaTCACCTGCCGGAGGGACTGAAGCAAGTAAAAAGatgctCTTACACAGCAGATGGGGACAGCCGCCGTCACCCAATTTAATTTTGCCCAGGCCGTGCAACAGTTGCTGCACTATGCGTCAGACCGGGCAGGATGGACTGGACGACAAAGCAGTCAGACGTCAGAGGACCATGAACTGTAACTATGCTAAAGaggacaaataatgaaataagaggctaataaaatgaatttgtttttaccttAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242247 lncRNA upstream 145659 30423953 ~ 30430650 (+) True G178950
TU242231 lncRNA upstream 201144 30374814 ~ 30375165 (+) True G178934
TU242230 lncRNA upstream 207400 30364760 ~ 30368909 (+) True G178933
TU242227 lncRNA upstream 244695 30324112 ~ 30331614 (+) False LOC120545414
TU242205 lncRNA upstream 300737 30235218 ~ 30275572 (+) True G178918
TU242323 lncRNA downstream 106993 30684199 ~ 30684478 (+) True G178983
TU242324 lncRNA downstream 107670 30684876 ~ 30688108 (+) True G178984
TU242329 lncRNA downstream 107670 30684876 ~ 30688108 (+) False G178984
TU242350 lncRNA downstream 208092 30785298 ~ 30785695 (+) True G178996
TU242671 lncRNA downstream 290812 30868018 ~ 30869258 (+) True G179236
XM_039779064.1 mRNA upstream 33776 30511961 ~ 30542533 (+) True scarb1
XM_039779704.1 mRNA upstream 110097 30450437 ~ 30466212 (+) True ash2l
XM_039779705.1 mRNA upstream 110097 30450437 ~ 30466212 (+) False ash2l
XM_039779707.1 mRNA upstream 177200 30381981 ~ 30399109 (+) True ddx56
XM_039779732.1 mRNA upstream 231506 30338710 ~ 30344803 (+) True LOC120545426
XM_039779155.1 mRNA downstream 9801 30587007 ~ 30683074 (+) False slc4a5b
XM_039779149.1 mRNA downstream 9801 30587007 ~ 30683074 (+) True slc4a5b
XM_039779150.1 mRNA downstream 9801 30587007 ~ 30683074 (+) False slc4a5b
XM_039779153.1 mRNA downstream 9801 30587007 ~ 30683074 (+) False slc4a5b
XM_039779151.1 mRNA downstream 9801 30587007 ~ 30679880 (+) False slc4a5b
XR_005636691.1 other upstream 265415 30264383 ~ 30310894 (+) True zmiz2
TU242148 other upstream 554092 30021319 ~ 30022217 (+) True G178881
TU242149 other upstream 554092 30021319 ~ 30022217 (+) False G178881
TU242091 other upstream 780995 29794144 ~ 29795314 (+) False LOC120545429
TU242100 other upstream 832234 29742623 ~ 29744075 (+) True G178845
TU242927 other downstream 810541 31387747 ~ 31480094 (+) True G179407
TU243294 other downstream 1501971 32079177 ~ 32099542 (+) True G179655
TU243292 other downstream 1512222 32089428 ~ 32092131 (+) False G179655
TU243298 other downstream 1512222 32089428 ~ 32099542 (+) False G179655
TU243411 other downstream 1864849 32442055 ~ 32448815 (+) True LOC120545732

Expression Profile