RNA id: TU242671


Basic Information

Item Value
RNA id TU242671
length 604
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G179236
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 30868018 ~ 30869258 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccactacgttcacctgttccagctttagttactagttacttcagttactccgctacattcacctgttccagctttagttactagttactttagttactccgctacattcacctgttccagctttagttactagttagtttagttactagttactttagttactccgctacattcatctgttccagctttagttactagttactttagttactccgctacattcatctgttccagctttagttactagttactttagttactccgctacattcatctgttacagctttagttactagttactttagttactccgctacattcatctgttacagctttagttactagttactttagttactccgctacattcacctgttccagctttagttactagttactttagttactccactacattcatctgttccagctttagtgactagttactttagttactccactacattcatctgttccagctttagttactagttactttagttactccgctacattcatgtgttatagctttagttactagttactttagttactccgctacattcatctgttacagctttagttactagttactttagttaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242350 lncRNA upstream 82323 30785298 ~ 30785695 (+) True G178996
TU242324 lncRNA upstream 179910 30684876 ~ 30688108 (+) True G178984
TU242329 lncRNA upstream 179910 30684876 ~ 30688108 (+) False G178984
TU242323 lncRNA upstream 183540 30684199 ~ 30684478 (+) True G178983
XR_005636600.1 lncRNA upstream 290812 30576309 ~ 30577206 (+) True LOC120544906
TU242689 lncRNA downstream 89322 30958580 ~ 30958817 (+) True G179250
TU242703 lncRNA downstream 175990 31045248 ~ 31045754 (+) True G179262
XR_005636719.1 lncRNA downstream 218731 31087989 ~ 31096658 (+) True LOC120545659
TU242705 lncRNA downstream 218945 31088203 ~ 31101394 (+) False LOC120545659
TU242713 lncRNA downstream 240533 31109791 ~ 31195586 (+) True G179269
XM_039779153.1 mRNA upstream 184944 30587007 ~ 30683074 (+) False slc4a5b
XM_039780197.1 mRNA downstream 246594 31115852 ~ 31123205 (+) True crybb1
XM_039780195.1 mRNA downstream 257201 31126459 ~ 31152167 (+) True acads
XM_039780640.1 mRNA downstream 333293 31202551 ~ 31240037 (+) False sept5b
XM_039780641.1 mRNA downstream 334021 31203279 ~ 31240037 (+) True sept5b
XM_039780642.1 mRNA downstream 334491 31203749 ~ 31240038 (+) False sept5b
XR_005636691.1 other upstream 557124 30264383 ~ 30310894 (+) True zmiz2
TU242148 other upstream 845801 30021319 ~ 30022217 (+) True G178881
TU242149 other upstream 845801 30021319 ~ 30022217 (+) False G178881
TU242091 other upstream 1072704 29794144 ~ 29795314 (+) False LOC120545429
TU242100 other upstream 1123943 29742623 ~ 29744075 (+) True G178845
TU242927 other downstream 518489 31387747 ~ 31480094 (+) True G179407
TU243294 other downstream 1209919 32079177 ~ 32099542 (+) True G179655
TU243292 other downstream 1220170 32089428 ~ 32092131 (+) False G179655
TU243298 other downstream 1220170 32089428 ~ 32099542 (+) False G179655
TU243411 other downstream 1572797 32442055 ~ 32448815 (+) True LOC120545732

Expression Profile