RNA id: XM_039780640.1


Basic Information

Item Value
RNA id XM_039780640.1
length 1938
RNA type mRNA
GC content 0.49
exon number 13
gene id sept5b
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 31202551 ~ 31240038 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTACTAAACATTCAGCACAATGGAACTGTTTTCACTCAAATGCAAATTCAAAAATCAACCAGAAGGACTGACATCTTGTTAAAAAGGATTTTGCcactttaaacaaaaaaaaggatAAACATTTCTGCGCCCGTGAACGCTTCTGTTGGACCTTCTCCATCTTCTTTTGCTGCGACGGAGGGATATTGTGCAGCATACATTAGGCTAAAGAGgctccagacagacagacaggcagacagacccGCCTCTTTTCGGTCTTTCAGTTCGGACGTTCATCACAATCCAAAACTGAGTCCGAGATGACGGCTAACAGCAGCAGGTACAGGAGCCGCACGCCCCGCTCAGAAGATGCAGAGGAGAAAGATTACGTTGGTTTCGCGACGCTGCCCAACCAGGTGCACAGGAAGTCGGTGAAAAAGGGATTTGACTTCACCCTCATGGTGGCAGGTGAGTCTGGTCTGGGTAAATCCACTCTGGTGAACAGTCTGTTCCTCACCGATCTGCATAAAGACAGAAAACTGCTCAACGCCGAAGAGCGAATCCATCAGACGGTGGAGATCACGAAGCACACGGTGGACATCGAGGAGAGAGGGGTGAAGCTGAAGCTGACCATCCTGGACACACCTGGTTTCGGAGACGCCGTCAACAACACCGACAGcTGGACGTCCATCACGGACTACATCGACCAGCAGTTTGAGCATTATTTCAGAGACGAGAGCGGACTCAACAGGAAGAACATCCAGGACAACCGAGTGCACTGCTGCCTCTACTTCATCCCTCCGTTTGGACAcggGCTCCGTCCCATCGACATCCAGTTCATGAAGGCGCTGCAGGACAAAGTCAACGTGGTTCCTCTCATCGCCAAGGCCGACTGCCTCACACCTGCCGAGATCAAGAAACTCAAAGAGAGGCTGAGGGAAGAGATTGACAGGGAAGGGATAAAGGTCTACCAGTTCCCCGACTGCGACTCCGACGAGGACGAGGAGTTCAAGCGGATAGATAAAGAGCTGAAGGAGAGCACTCCGTTCGCCGTGATCGGCAGCAACACGGTGGTCGAAGCCCGAGGCCAGAGAGTGAGAGGGCGGCTGTACCCGTGGGGCATCGTCGAGGTGGAGAACCCGTCCCACTGTGACTTTGTGAAGCTGAGGACCATGCTGATCAGGACCCACATGCACGACCTGAAGGACATCACCAACGACCTTCACTACGAGAACTACAGAGCTCAGTGCATCCACACCATGACCAGCAGGATGAACGCAGACCGGGTGGAGAGCCCCATCCCTCTGCTGCCGATGGCCGCGCCGGACGTGGAGACGGAGAAACTCATCAAAAGGAAAGATGACGAACTGAGGAAGATGCAGCAGATGCTTCAGAAGATGCAGCAGCAGATGCATGACCACGACCTGTGACCTCTCGCACTACTGATGTGACAGGAGAGCAACCCGAACTAAGAATTAAACATTTAAATCTTCATGAAATCCATTTCTCCAGAGGGGGACGAGAGGAAGAATTCTTTGGGATATATTTACAGTCAATATTTctcctgatttaaaaaaaaacaaacaatggtcACAAAGAGAGTAGATGAGCAGCATGCTGGGAGGTGTAGTTCCACCTTACTTTAATAATACTTTTTCTTTCAATAGTCATTAGCCAAGTGAGCCCAGGTAGGCAATAGAGAGTAGATTGCACTTTGTTACCTTTTAGATCACAGTAGATTTCTACTTGAAAATACTAAATGAGATAATGCACCATACCCTCAGTTCATttagtcagtccttccagaagtTTTTCTGTGATTGTTGCGAGGCAAAAATCCTCGATTATGCGGCAcgctttcttaaaaaatgcgatggaatatgctatatatgatatttatgcaattttatgcgatgaaattgcgggaacttgcaaaaactgcagtttgctccccaacac

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242713 lncRNA upstream 6965 31109791 ~ 31195586 (+) True G179269
TU242740 lncRNA upstream 29355 31171803 ~ 31173196 (+) True G179284
TU242705 lncRNA upstream 101157 31088203 ~ 31101394 (+) False LOC120545659
XR_005636719.1 lncRNA upstream 105893 31087989 ~ 31096658 (+) True LOC120545659
TU242703 lncRNA upstream 156797 31045248 ~ 31045754 (+) True G179262
TU242765 lncRNA downstream 37533 31277570 ~ 31278338 (+) False G179298
TU242776 lncRNA downstream 43911 31283948 ~ 31284365 (+) True G179308
TU242906 lncRNA downstream 57595 31297632 ~ 31298456 (+) True G179405
TU242957 lncRNA downstream 163033 31403070 ~ 31403841 (+) True G179430
TU242918 lncRNA downstream 174030 31414067 ~ 31462608 (+) False G179407
XM_039780195.1 mRNA upstream 50384 31126459 ~ 31152167 (+) True acads
XM_039780197.1 mRNA upstream 79346 31115852 ~ 31123205 (+) True crybb1
XM_039779152.1 mRNA upstream 519477 30587008 ~ 30683074 (+) False slc4a5b
XM_039779154.1 mRNA upstream 519477 30587008 ~ 30683074 (+) False slc4a5b
XM_039779156.1 mRNA upstream 519477 30602250 ~ 30683074 (+) False slc4a5b
XM_039779213.1 mRNA downstream 63108 31303145 ~ 31402967 (+) True mctp1b
XM_039779214.1 mRNA downstream 63108 31303145 ~ 31402967 (+) False mctp1b
XM_039779066.1 mRNA downstream 188130 31428167 ~ 31458606 (+) True LOC120545075
XM_039779231.1 mRNA downstream 361788 31601825 ~ 31645660 (+) False LOC120545154
XM_039779232.1 mRNA downstream 386205 31626242 ~ 31645660 (+) False LOC120545154
XR_005636691.1 other upstream 891657 30264383 ~ 30310894 (+) True zmiz2
TU242148 other upstream 1180334 30021319 ~ 30022217 (+) True G178881
TU242149 other upstream 1180334 30021319 ~ 30022217 (+) False G178881
TU242091 other upstream 1407237 29794144 ~ 29795314 (+) False LOC120545429
TU242100 other upstream 1458476 29742623 ~ 29744075 (+) True G178845
TU242927 other downstream 147710 31387747 ~ 31480094 (+) True G179407
TU243294 other downstream 839140 32079177 ~ 32099542 (+) True G179655
TU243292 other downstream 849391 32089428 ~ 32092131 (+) False G179655
TU243298 other downstream 849391 32089428 ~ 32099542 (+) False G179655
TU243411 other downstream 1202018 32442055 ~ 32448815 (+) True LOC120545732

Expression Profile